External Email - Use Caution
Dear Sir/Madam,
Hope this mail finds you well, considering the present pandemic scenario
across globe.
I have installed FreeSurfer in my PC successfully and I have been following
tutorials and freesurfer wiki to learn the basics of it.
I have an image
onfiguration’ steps in
> the FS download page, you should always run the following before using
> freesurfer:
>
>
>
> export FREESURFER_HOME=/usr/local/freesurfer
>
> source $FREESURFER_HOME/SetUpFreeSurfer.sh
>
>
>
> Hope that helps,
>
> Andrew
>
>
External Email - Use Caution
You should download lower versions. Ubuntu 16.04.1 LTS. Then only it will
work.
On Mon, Mar 30, 2020 at 8:01 AM Gonzalo Rojas Costa <
gonzalo.rojas.co...@gmail.com> wrote:
> External Email - Use Caution
>
> Hi:
>
> I tried to use the tkregis
External Email - Use Caution
Dear all,
I am a beginner in FreeSurfer world.
I have 4 questions. It would be kind enough if you could clarify my
confusions.
- I have came across that 'Freesurfer can reconstruct 2D cortical
surface from 3D T1 MRI brain image'. However, I know
ns of labelings for
> all of them I believe, but I defer to Doug on the details
>
> cheers
> Bruce
>
>
> On Sun, 12 Apr 2020, Koustav Chatterjee wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear all,
> > I am a beginner in FreeSur
We use T1 because it is by far the most common anatomical sequence and
> historically has had better cnr/unit-time
>
> cheers
> Bruce
>
> On
> Mon, 13 Apr 2020, Koustav Chatterjee wrote:
>
> >
> > External Email - Use Caution
> >
> > Thank
; all of them I believe, but I defer to Doug on the details
>
> cheers
> Bruce
>
>
> On Sun, 12 Apr 2020, Koustav Chatterjee wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear all,
> > I am a beginner in FreeSurfer world.
> >
External Email - Use Caution
*Thank you Sir for your reply.*
On Tue, Apr 14, 2020 at 12:20 AM Douglas N. Greve
wrote:
> We do not label those (yet!)
>
> On 4/13/2020 2:42 PM, Koustav Chatterjee wrote:
>
> External Email - Use Caution
> Dear Sir,
>
External Email - Use Caution
Dear Sir,
I have stuck with two basic steps while installing FreesUrfer in my new
system. May I request you to help me resolving the problem.
1. After successful completion of 'recon-all' command , a folder named as
'samplept1' has been formed under
lume images, you can use Alt+C key to cycle
> through them.
>
> Best,
> Ruopeng
>
> On Oct 2, 2020, at 2:44 AM, Koustav Chatterjee <
> chatterjeekous...@gmail.com> wrote:
>
> External Email - Use Caution
>
>
> Dear Sir,
>
> I have stuck with t
External Email - Use Caution
Hello,
I have found the following error while click on 'Generate Stats Data
Tables' to import the aseg and aparc data from the FreeSurfer-processed
group data, Could you please suggest how to overcome the issue?
[image: image.png]
Thank you,
KC
___
External Email - Use Caution
Dear Sir/Madam,
Could you please tell what does it mean by 'Gray volume' and 'avg
thickness' of various structures while we are parcellating cortical
surfaces through FreeSurfer and getting 'aparcstats2table'.
Thank you for your help.
Regards,
KC
[
External Email - Use Caution
Dear FreeSurfer team,
I have a few questions to clarify the confusion regarding data analysis.
1. For each subject, is it recommended to normalize the raw volumetric
data by total intracranial volume? If so, is it true only for volumes of
sub
External Email - Use Caution
Dear all,
I had an understanding that Desikan-Killiiany atlas can parcellate total of
68 regions from both hemispheres. However, after running recon-all -all, I
can see total of 62 regions. I am afraid if you could help me understanding
these discrepa
l’s, but
> I’ll cc Ron who can comment
>
>
>
> Cheers
>
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Koustav Chatterjee
> *Sent:* Wednesday, December 1, 2021 2:11 AM
> *To:
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Koustav Chatterjee
> *Sent:* Wednesday, December 1, 2021 10:48 AM
> *To:* Freesurfer support list
> *Cc:* ron_killiany Ron KILLIANY (rkilli...@cajal-1.bu.edu) <
> rkilli...@ca
External Email - Use Caution
Dear FreeSurfer experts,
I am trying to find the correlation between the regional cortical thickness
and volume with different clinical measures of a neurodegenerative
condition. I am using DK atlas to get the cortical measures and establish
the correl
kSvHw0-5NJAAQuiJYK1gyeuU3norr7mIYPeZ6qkyiBP0topWayXXHTg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FGroupAnalysis
> One of the outputs will be the correlation (along with the sig of the
> correlation)
>
>
> On 2/13/2022 6:35 PM, Koustav Chatterjee wrote:
>
> External Email - Use Cautio
tCU9deV3FLuLoTBkSvHw0-5NJAAQuiJYK1gyeuU3norr7mIYPeZ6qkyiBP0topWayXXHTg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FGroupAnalysis>
>> One of the outputs will be the correlation (along with the sig of the
>> correlation)
>>
>>
>> On 2/13/2022 6:35 PM,
cd $SUBJECTS_DIR/glm
Thank you for your time and help.
Regards,
KC
On Mon, Feb 14, 2022 at 10:48 PM Douglas N. Greve
wrote:
> Yes, single group just means a single class in the FSGD file. Then just
> include your clinical measure as a variable in the FSGD
>
> On 2/14/2022 11:39 AM,
External Email - Use Caution
Dear FreeSurfer experts,
I need your help.
I am trying to run mris_preproc --fsgd in order to see the effect of
cortical volume on velocity, accounting for the effects of eTIV in the
analysis.
My .fsgd file looks like
GroupDescriptorFile 1
Title Vel_v
External Email - Use Caution
Dear FreeSurfer experts,
I have reinstalled FreeSurfer 6 in my new system following the FreeSurfer
wiki.
I have saved the 'licence.txt' in /usr/local/freesurfer.
However, I am getting following error-
ERROR: Invalid FreeSurfer license key found in lic
ing the file “license.txt” or “licence.txt”. We look for the
> former, not the latter. And is there a .license.txt in that directory? And
> if so, where did it come from?
>
> Cheers
>
> Bruce
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...
External Email - Use Caution
Dear FreeSurfer experts,
I have reinstalled FreeSurfer 6 in my new system following the
FreeSurferes. I saved “license.txt” in /usr/local/freesurfer. I am getting
the following error.
ERROR: Invalid FreeSurfer license key found in license file
/usr/
file originally? Can you try requesting
> another? I’ll leave the freeview question for Ruopeng.
>
>
>
> Cheers
>
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Koustav Chatterjee
>
25 matches
Mail list logo
