[Freesurfer] Running analysis on a Linux Partition

d I can't seem to find a way around this. I hope this makes sense, and thanks in advance for your assistance. Kind Regards, Kate Riggall ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/

[Freesurfer] Which files are needed to run longitudinal analysis?

the files needed for the analysis step, and what those files would be. Thanks in advance, Kate Riggall ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail

Re: [Freesurfer] Which files are needed to run longitudinal analysis?

lysis, is it sufficient to put the original subject names in the FSGD files, or should I specify "subject.long" to use the longitudinally processed data? Cheers, Kate Riggall On Thu, Mar 12, 2015 at 12:01 AM, Martin Reuter wrote: > Hi Kate, > > if you are only running stats

Re: [Freesurfer] Which files are needed to run longitudinal analysis?

Sorry, I believe I have fixed this by using --surface fsaverage lh. Thanks, Kate On Fri, Mar 13, 2015 at 9:59 AM, Kate Riggall wrote: > Bruce and Martin, > > Thanks, I now have it running of an external hard drive and it is working > well. As a follow-up question: > > Whe

[Freesurfer] longitudinal

what I would like to be able to do is check whether there is at least a good match between time points within each subject. Is there an automated way to do this that would be more efficient than checking each subject manually? Thanks in advance, Kate Riggall

Re: [Freesurfer] longitudinal

way. > > Best, Martin > > > On 03/31/2015 12:55 AM, Kate Riggall wrote: > > Hello all, > > I am running a 2 time point longitudinal analysis of some structural > brain images. I have noticed that there is some issues with the cortical > surface reconstruction, i.e. s

[Freesurfer] Fwd: recon-all error

y entering export SUBJECTS_DIR=/home/fsuser/host/Sprachlernen/Subjects I then created the subject data directory using recon-all -i Y03_1 -i Y03_2 -subjid Y03 before running recon-all -all. Any assistance would be much appreciated. Kind regards, Kate Riggall recon-all.log Description: B

Re: [Freesurfer] Fwd: recon-all error

ect.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i > orig.mgz --o orig_nu.mgz > > and send us the full screen output? > > thanks > Bruce > > > > > On Tue, 14 Oct 2014, Kate Riggall wrote: > > >> Hello, >> >> >> >> I am

Re: [Freesurfer] Fwd: recon-all error

to fix this, but if not you might want to check with > the MNI people > > cheers > > Bruce > > > On Tue, 14 Oct 2014, Kate Riggall wrote: > > Hi Bruce, >> The output is as follows: >> >> fsuser@xubuntu-VirtualBox:~$ cd >> /home/fsuser/host