Dear freesurfer users,
I have recently downloaded freesurfer (virtualbox verion) and started testing
using the sample data bert. I got the following error (I also tried on my data
and the same error occured). Any suggestions?
FINAL ITERATIVE TEMPLATE DEFORMATION
Compute Lo
Dear Freesurfer Experts,
I have ran recon-all on a T1 SPGR image of a control subject without error.
The outputs look reasonable (visually). However, the numbers I got from
aseg.stats do not make sense (they are way off). Any thoughts?
# Title Segmentation Statistics
#
# generating_program
Dear Freesurfer users,
I am wondering how are the volumes calculated from stats such aseg.stat. When
I export the aseg and do a voxel count and multiple the volume per voxel, my
total volume is different from that is given by the stats. For example, the
hippocampal volume given by aseg.stats
:42 am
Subject: Re: [Freesurfer] Subcortical Volume Calculation
To: Hui J Yu
Cc: freesurfer@nmr.mgh.harvard.edu
> yes, we do a partial volume correction of the volumes,
> accounting for the fraction of the structure in each border voxel.
>
> cheers
> Bruce
> On Mon, 15 Feb 20
Dear freesurfer users,
After running recon-all for all subjects, I started running qcache using the
following commands:
(in the subject directory)
foreach i (*)
recon-all -s $i -qcache
end
However, the process was terminated/stopped. Is there a way to resume the
process (like what you will ha
