Nick,
I am tryng to get the updated executables for mri_segstats and
mris_wm_volume that are described in your mail message:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg08009.html
Christian,
Updated mri_segstats and mris_wm_v
It appears that the program mri_segstats is missing under version 4.1 of
mac.
diff ~/MacLeopard.list ~/Linux64.list
38a39
> /opt/freesurfer/bin/3dvolreg
62a64
> /opt/freesurfer/bin/dmri_poistats
77a80
> /opt/freesurfer/bin/flirt.newdefault.20080811.sch
79a83,84
> /opt/freesurfer/bin/freeview
> /o
Sorry for the noise.
This was a bug in our distribution system where version 4.05 was being
installed in /opt/freesurfer-4.1.0. It is a bug on our end.
Thanks for helping us figure this out.
Hans
On 12/12/08 6:38 PM, "Greg Harris" wrote:
> Nick,
>
> We have yet another request regarding t
The University of Iowa
Iowa City, IA 52241
(319) 353 8587
> From: Greg Harris <[EMAIL PROTECTED]>
> Date: Wed, 22 Aug 2007 15:36:59 -0500
> To: Nick Schmansky <[EMAIL PROTECTED]>, Freesurfer Mailing List
>
> Cc: Hans Johnson <[EMAIL PROTECTED]>
bit linux" version of the code.
Again, thank you for the quick response.
Hans
--
Hans J. Johnson, Ph.D.
[EMAIL PROTECTED]
278 GH
The University of Iowa
Iowa City, IA 52241
(319) 353 8587
> From: Bruce Fischl <[EMAIL PROTECTED]>
> Date: Fri, 24 Aug 2007 10:26:03 -0400 (EDT)
> To
[EMAIL PROTECTED]>
> Date: Fri, 24 Aug 2007 12:08:20 -0400
> To: Hans Johnson <[EMAIL PROTECTED]>
> Cc: Bruce Fischl <[EMAIL PROTECTED]>, Greg Harris
> <[EMAIL PROTECTED]>, Freesurfer Mailing List
> , "H. Jeremy Bockholt"
> <[EMAIL P
Bruce Fischl <[EMAIL PROTECTED]>
> Date: Fri, 24 Aug 2007 10:26:03 -0400 (EDT)
> To: Hans Johnson <[EMAIL PROTECTED]>
> Cc: Greg Harris <[EMAIL PROTECTED]>, Nick Schmansky
> <[EMAIL PROTECTED]>, Freesurfer Mailing List
> , "H. Jeremy Bockholt"
> &l
52241
(319) 353 8587
> From: Bruce Fischl <[EMAIL PROTECTED]>
> Date: Fri, 24 Aug 2007 14:53:58 -0400 (EDT)
> To: Doug Greve <[EMAIL PROTECTED]>
> Cc: Hans Johnson <[EMAIL PROTECTED]>, Greg Harris
> <[EMAIL PROTECTED]>, Freesurfer Mailing List
> , Nick Schma
Hello,
Is there a way to apply a custom color scale to overlays in tksurfer. It
seems that the the only options are "Green Red; Heat; "Blue Red". I would
really like to make my own colors.
Any suggestions would be greatly appreciated.
Thanks,
Hans
--
Hans J. Johnson, Ph.D.
[EMAIL PROTECTED
Hello Freesurfer Developers,
We are attempting to install freesurfer as one of our standard image
processing packages at the Mental Health Clinical Research Center Image
Processing Lab at The University of Iowa. Our environment consists of
Redhat EL3WS, Redhat EL4WS, and MacOSX 10.4 operating sys
Bruce Fischl" <[EMAIL PROTECTED]> wrote:
> Hi Nick,
>
> could you help Hans get stuff installed? Hans: didn't you guys already
> have a version running?
>
> thanks,
> Bruce
>
>
> On Wed, 27 Jul 2005, Hans Johnson wrote:
>
>> Hell
gt; 149 Thirteenth Street, Room 2301 Charlestown, MA 02129 USA
>
>
>
> On Wed, 2005-07-27 at 07:52 -0500, Hans Johnson wrote:
>> Hello Freesurfer Developers,
>>
>> We are at
Developers:
I am trying to convert a nifti formated image to the mgz format using
mri_convert, but there is an error stating that the time units are unknown.
Since there are only 3 dimension, the time dimension should not matter.
mri_convert -it nii -ic 128 128 128 -oc 128 128 128 -iid 1.0 0.0 0.
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