Anyone manage to successfully configure recon-all to run with -use-gpu for
recent cuda toolkit versions? I realize cuda support has ceased over the past
few years for Freesurfer, but have there been any successful builds for CUDA
toolkit versions 6 and up? I am currently looking to configure cud
esurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 22 June 2016 at 18:17, Derek Pisner wrote:
> Anyone manage to successfully configure recon-all to run with -use-gpu for
> recent cuda toolkit versions? I realize cuda support has ceased over the past
>
-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar
[freesurfer@gmail.com]
Sent: Wednesday, June 22, 2016 6:14 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 22 June 2016 at 19:32, Derek Pisner wrote
PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 22 June 2016 at 19:32, Derek Pisner wrote:
> Thanks for the very quick reply. Good to know that someone has successfully
> compiled GPU binaries for newer CUDA versions. I took a quick look at
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Derek Pisner
[dpis...@psychiatry.arizona.edu]
Sent: Thursday, June 23, 2016 1:26 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
Hi Richard,
Hope
un...@nmr.mgh.harvard.edu] on behalf of R Edgar
[freesurfer@gmail.com]
Sent: Thursday, June 23, 2016 5:23 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 23 June 2016 at 16:26, Derek Pisner wrote:
> Hi Richard,
>
> Hope this finds you w
Sunday, June 26, 2016 1:51 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 24 June 2016 at 05:34, R Edgar wrote:
> On 23 June 2016 at 22:44, Derek Pisner wrote:
>
>> Fixed the gcc problems as well (this required a tweak to host_conf
-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar
[freesurfer@gmail.com]
Sent: Thursday, June 30, 2016 5:46 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 27 June 2016 at 01:27, Derek Pisner wrote
ly 2016 at 17:48, Derek Pisner wrote:
> Here is the output attachment.
Hmmm this is the actual error:
==
gcc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include/dicom
-I../xml2 -I../include/NrrdIO -DTEEM_DIO=0 -DTEEM_32BIT=0
-DTEEM_QNANHIBIT=1 -DTEEM_ENDIAN=1234 -I../jpeg -I../tiff
]
Sent: Monday, July 04, 2016 12:47 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA group stats visualization
Hi Derek - Are you by any chance using the dev version of freeview?
a.y
On Fri, 1 Jul 2016, Derek Pisner wrote:
> Dear Anastasia,
> I am running into an issue with th
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar
[freesurfer@gmail.com]
Sent: Sunday, July 03, 2016 3:06 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Any updates on recon-all GPU support?
On 2 July 2016 at 19:06, Derek Pisner wrote:
> Thanks anyway for taking a l
AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA group stats visualization
Hi Derek - this is strange. The dev and 5.3 version of freeview should
display them differently. Can you send me one of those mean.txt files?
a.y
On Wed, 6 Jul 2016, Derek Pisner wrote:
> Hi Anasta
licate the problem in our own longitudinal data. Did you
by any chance have any subjects that had only a single time point?
a.y
On Thu, 7 Jul 2016, Derek Pisner wrote:
> Sure thing. fmajor mean.txt file is attached.
>
>
> Thanks a bunch,
> -Derek
> ___
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Derek Pisner
[dpis...@psychiatry.arizona.edu]
Sent: Tuesday, July 12, 2016 5:06 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA group stats visualization
Hi Anastasia,
All su
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