Hi,
I've created an average brain and would like to use that as the
"common-space subject" in my qdec analysis. However, the program does not
seem to allow editing of that box - I can't seem to delete or type over the
default fsaverage. Is there a trick to changing this information or another
wa
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Hi,
I have been processing datasets on my Linux on v6.0 but have recently been made
to work from home where I only have access to a Mac. I’m getting the following
error message when continuing the editing on datasets that were already started
on my
abled (it’s not by default).
Best
Andrew
From: on behalf of "Danielian, Laura
(NIH/NINDS) [E]"
Reply-To: FS Help
Date: Tuesday, March 24, 2020 at 10:05 AM
To: FS Help
Subject: [Freesurfer] ERROR - build stamps do not match
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Hi,
I have been
recons dying after printing “build stamps do not match”? That
message should just be a warning and not force a recon-all exit unless
REQUIRE_FS_MATCH is enabled (it’s not by default).
Best
Andrew
From: on behalf of "Danielian, Laura
(NIH/NINDS) [E]"
Reply-To: FS Help
Date: Tu
nymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymous" (no quotes)
It will ask you for a password: use "anonymous" (no quotes)
cd transfer/incoming
binary
put subjects.tar.gz
Send an email that the file has been and the name of the file.
On 6/9/2020
0:10 AM
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] Longitudinal Stream Problem
I have your data, but it does not have the base image. Can you upload that as
well?
On 6/15/2020 5:15 PM, Danielian, Laura (NIH/NINDS) [E] wrote:
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Hi Douglas
n 6/16/2020 10:19 AM, Danielian, Laura (NIH/NINDS) [E] wrote:
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Hi Douglas,
OK I just uploaded the base separately. danielianbase.tar.gz I thought it was
part of the original bundle. Sorry!
Laura
From: "Douglas N. Greve" <mailto:dgr...@mgh.harvard.
mgh.harvard.edu"
Subject: Re: [Freesurfer] Longitudinal Stream Problem
OK, I have it now and am able to verify the problem. It's really strange -- I
don't know why it is behaving like this. It may take me a few days to dig into.
On 6/18/2020 11:39 AM, Danielian, Laura (NIH/NINDS) [E]
I used the unedited brain, the
surfaces went to the right place (yellow surface)
On 6/22/2020 9:21 AM, Danielian, Laura (NIH/NINDS) [E] wrote:
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Thanks Douglas. I could send other problem data sets too if it would help.
Just let me know.
Thanks,
Laura
Fro
ream Problem
If you run this, it will create a new brain.finalsurfs and rerun just what you
need to rerun
recon-all -s subject -autorecon2 -nogcareg -nocalabel -nonormalization2
-autorecon3
On 6/22/2020 1:20 PM, Danielian, Laura (NIH/NINDS) [E] wrote:
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Interesti
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