[Freesurfer] PETsurfer

Hi! I have been using freesurfer regularly and I am now trying to implement a few commands from PETsurfer https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer . It seems like I cannot use any of the commands listed in the wiki (such as gtmseg

Re: [Freesurfer] PETsurfer

e wrote: > > There is nothing special you have to do. What version of FS do you have? You > still have to source the FS environment. If you can run recon-all, you should > be able to run PETsurfer > > On 11/1/2021 12:26 PM, Brusaferri, Ludovica wrote: >> Hi! >> >>

Re: [Freesurfer] PETsurfer

n PETsurfer from FS builds v6.0, v7.1, v7.2+ (gtmseg, mri_gtmpvc, etc.) on v5.3.0 reconstructions. (Note: it's often recommended for reproducibility sake to use the same version of FS if you can spare the compute time). On Wed, Nov 3, 2021 at 8:07 AM Brusaferri, Ludovica mailto:lbrusafe

[Freesurfer] V5 / v7

Hi! I am using a pipeline that was implemented and validated using fs 5.3 , which does the following: * compute transformation matrix for linear registration of SUV with T1-2mm, with spm * use tkergister to transform the matrix into .mat, and then invert the matrix * use flirt to move T1 images