[Freesurfer] few questions regarding qdec

2013-08-19 Thread Binod Thapa-Chhetry
HI all, We had submitted a paper based on cortical thickness analysis in Qdec. The reviewer's had couple concerns regarding the QDec analysis. We would appreciate your help to address/resolve those issues. Here are the concerns: (1) What was the rationale of using 10mm smoothing? The typical fMRI

[Freesurfer] Research position at Columbia University Medical Center {Disarmed}

2014-07-10 Thread binod thapa-chhetry
The Molecular Imaging and Neuropathology Division at Columbia University Medical Center is seeking a full-time image analyst to begin working immediately. The position involves assisting in the processing of brain imaging data, including positron emission tomography (PET) and structural and fun

[Freesurfer] about option -show-edits in version 5.0.0

2011-02-08 Thread binod thapa chhetry
Hi, I am trying to develop a custom software to run freesurfer, make edits if necessary(user intervention) and rerun the freesurfer from appropriate staring point and also, track/record the user interventions. My prime concern is the tracking of user intervention part, and I came across -show-edit

[Freesurfer] retrieving persistent edits from manually edited reruns

2011-02-17 Thread Binod Thapa-Chhetry
Hi, We are trying to set up a freesurfer pipeline to measure cortical thickness for a multisite project. I came across the show-edits option in freesurfer 5.0.0. My understanding from herehttp://surfer.nmr.mgh.harvard.edu/fswiki/Edits is that running show-edits is supposed to give a edits.mgz