Hello,
We have already generated a number of original surface files (.orig) in our
lab. We were wondering if there is a way to generate the smooth and the
inflated surface from the existing .orig files? Could you provide us a
seperate tool to do this conversion?
Sincerely,
Arvind Gururajan
> ###
> ERROR: Flag ZM unrecognized.
> -smooth1 ZM
>
>
> The folder ZM has only one orig file in the surf directory. There are no
> raw data(.COR files). Please let me know your feedback.
>
> Sincerely,
>
> Arvind Gururajan
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Hi,
I downloaded the entire MNI package. Although I see all these MNI files, I
still get the same error, file not found. Any clues why this might be?
Thanks,
Arvind Gururajan
On 9 Jun 2005, Bruce Fischl wrote:
> just download and install the whole MNI package. Much easier than trying
&
: `perl': File exists [ Same output even the first time]
Also, there are no tools in the path, I manually created current/bin and
current/lib. Is there a way to fix this, can I moved all the tools to these
two directories?
Your help is really appreciated.
Arvind Gururajan
On 10 Jun 2005,
ey).
>
> The important thing is to have perl in the /usr/pubsw/bin directory. If
> its already there, then no need to create a link.
>
> Hope this helps.
>
> Nick
>
>
>
> On Fri, 2005-06-10 at 16:51 -0500, Arvind Gururajan wrote:
>
> > Hi Nick,
>
ave
to use lh and rh.orig files seperately?
Thanks,
Arvind Gururajan
On 13 Jun 2005, Nick Schmansky wrote:
> Arvind,
>
> You are right, the MINC installation instructions are mistaken. A 'cd
> packages' is missing:
>
> mkdir -p packages
> cd packages
Hello all,
I just had a general question about freesurfer. Does freesurfer use
Boundary element model for realistic human head (not sphere etc) ?
Thanks,
Arvind Gururajan
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https
Hi,
Please do give me some more details.
Thanks,
Arvind Gururajan
On 6 Jul 2005, Bruce Fischl wrote:
> yes. Matti can give you details if you're interested.
>
> On Wed, 6 Jul 2005, Arvind Gururajan wrote:
>
> >
> > Hello all,
> >
> > I just had
Hi,
I have trouble viewing .orig files in Tksurfer. I used mris_convert to
generate .orig files from .ascii( with number of vertices and triangles for
each hemisphere). Any quick thoughts on what could be wrong ? No error
messages.
Help would be appreciated.
Arvind Gururajan
i Arvind,
>
> you need to give us more info, and the .xdebug_tksurfer files.
>
> Bruce
> On Thu, 14
> Jul 2005, Arvind Gururajan wrote:
>
> > Hi,
> >
> > I have trouble viewing .orig files in Tksurfer. I used mris_convert to
> > generate .orig files f
Hi,
Could anyone please tell me what could be wrong? What more information do I
need to provide? Your help will be really appreciated.
Arvind Gururajan
On 20 Jul 2005, Arvind Gururajan wrote:
> Hi Bruce,
>
> I had a single file with both hemisphere data points. Was able to make
it's the middle of the FSL/FreeSurfer course, so we're all really busy.
> Hopefully we'll get to it next week.
>
> Bruce
> On Thu, 21 Jul 2005, Arvind Gururajan
> wrote:
>
> > Hi,
> >
> > Could anyone please tell me what could be wrong? What
,
Arvind Gururajan
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nu in my mri directory?
Thanks,
Arvind Gururajan
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C position changed to (_,_,_) mean, it is already transformed?
Thanks,
Arvind Gururajan
On 7 Aug 2005, Bruce Fischl wrote:
> Hi Arvind,
>
> is your problem with the talairach or the cutting planes? You can alsways
> use tkregister2 to manually talairach.
>
> Bruce
>
>
Hello,
Recently moved freesurfer from one system to another, but I am having
trouble executing it.
./csurf: Permission denied.
I have license in the right folder. Has anyone experienced the same
problem.
Thanks,
Arvind
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