Hi, I downloaded the entire MNI package. Although I see all these MNI files, I still get the same error, file not found. Any clues why this might be?
Thanks, Arvind Gururajan On 9 Jun 2005, Bruce Fischl wrote: > just download and install the whole MNI package. Much easier than trying > to install various pieces.... > > On Thu, 9 Jun 2005, Arvind Gururajan wrote: > > > Hello, > > > > I am very new to Freesurfer. Could anybody please tell me which specific > > MNI tool, I need to install? > > > > > >> > >> I tried the following command. > >> > >> ./recon-all -smooth1 ZM > >> ######################################## > >> program versions used > >> $Id: recon-all-nmr,v 1.37 2004/01/06 22:21:48 tosa Exp $ > >> $Id: mri_motion_correct2,v 1.7 2004/01/16 20:25:10 tosa Exp $fire > >> mri_convert --version > >> $ > >> strings: rawtominc:: No such file or directory > >> strings: Command: No such file or directory > >> strings: not: No such file or directory > >> strings: found.: No such file or directory > >> strings: minctracc:: No such file or directory > >> strings: Command: No such file or directory > >> strings: not: No such file or directory > >> strings: found.: No such file or directory > >> strings: mincresample:: No such file or directory > >> strings: Command: No such file or directory > >> strings: not: No such file or directory > >> strings: found.: No such file or directory > >> strings: mincaverage:: No such file or directory > >> strings: Command: No such file or directory > >> strings: not: No such file or directory > >> strings: found.: No such file or directory > >> $Id: talairach2,v 1.5 2003/08/28 21:45:48 tosa Exp $ > >> mri_convert --version > >> $ > >> strings: mritotal:: No such file or directory > >> strings: Command: No such file or directory > >> strings: not: No such file or directory > >> strings: found.: No such file or directory > >> strings: nu_correct:: No such file or directory > >> strings: Command: No such file or directory > >> strings: not: No such file or directory > >> strings: found.: No such file or directory > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> $ > >> ####################################### > >> ERROR: Flag ZM unrecognized. > >> -smooth1 ZM > >> > >> > >> The folder ZM has only one orig file in the surf directory. There are no > >> raw data(.COR files). Please let me know your feedback. > >> > >> Sincerely, > >> > >> Arvind Gururajan > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
