Re: [Freesurfer] Volume timeseries to native and fsaverage

2020-05-18 Thread özenç taşkın
External Email - Use Caution Awesome, thanks Doug. That's pretty helpful. I should also use the orig.mgz with tkregister2 instead of rawavg.mgz if the aim is to get surface maps in native space, am I right ? And by native space I mean the subjects' native brain structure and not

Re: [Freesurfer] Volume timeseries to native and fsaverage

2020-05-19 Thread özenç taşkın
ormed space, they are already there On 5/18/2020 11:34 AM, özenç taşkın wrote: External Email - Use Caution Awesome, thanks Doug. That's pretty helpful. I should also use the orig.mgz with tkregister2 instead of rawavg.mgz if the aim is to get surface maps in native space, am I righ

[Freesurfer] Different volume measurements Freesurfer V7.1.1

2021-09-13 Thread özenç taşkın
External Email - Use Caution Hello Freesurfer developers, I am trying to measure the optic chiasm volume from a set of subjects and I ran recon-all with Freesurfer version 7.1.1 to do that. I also ran HCP minimal processing pipeline on the same set of subjects for some other project