Re: [Freesurfer] custom ROI as a reference region for PET

Hi Lauri, yes, that's fine. It should give the same answer since you are not using PVC or accounting for TFE. doug On 3/26/2025 11:14 AM, Lauri Tuominen wrote: External Email - Use Caution Dear PETsurfers, I am trying to use PETsurfer and MRTM2 to analyze a SynVesT1 PET scan with

Re: [Freesurfer] Recon-all using mni152 as template

I'm not sure what you mean. by itself mni152 is not a segmentation template. Or do you want to do the analysis in mni152 space? If so, why? On 3/27/2025 10:17 AM, Davide Sabbadin wrote: External Email - Use Caution Hi all, Is there the possibility to perform the segmentation through r

Re: [Freesurfer] Freeview

External Email - Use Caution Ok it's working De : freesurfer-boun...@nmr.mgh.harvard.edu de la part de Wang, Ruopeng Envoyé : mercredi 26 mars 2025 22:00:25 À : Freesurfer support list Objet : [*Suspicious Email*] Re: [Freesurfer] Freeview Can

Re: [Freesurfer] Recon-all using mni152 as template

External Email - Use Caution i am working with pet images and after running recon-all i used the transformation .lta to move the pet image in the standard space (pet and mri are already in the same space). By looking at the segmentation template aparc+aseg i noticed there is a loot

[Freesurfer] thresholding advice for probabilistic subfield amygdala atlas in MNI 152 space

External Email - Use Caution Hello, When I threshold the new probabilistic maps amygdala subnuclei in MN152 space at a threshold of 0.8 I see that only 5 amygdala subnuclei survive (AAA, Basal nucleus, Corticoamygdaloid transition, Lateral nucleus, Accessory Basal nucleus). Is t

[Freesurfer] Recon-all using mni152 as template

External Email - Use Caution Hi all, Is there the possibility to perform the segmentation through recon-all using a different template, e.g. mni152? Thanks, Sabbadin Davide ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https