[Freesurfer] Recon-all-clinical pipeline

External Email - Use Caution Dear sir/madam, I am implementing the recon-all-clinical pipeline on clinical MRI scans. I have done a test-run of around 70 T1-w clinical MRI scans. Processing of 9 out of 70 scans have failed. In almost all the failed processing scans, the pipeline

[Freesurfer] xhemi fsaverage_sym rh backward mapping

External Email - Use Caution Dear freesurfer team, in the wiki (https://secure-web.cisco.com/1WbYcGgb3srAnGYyZARo_Jad7UgANe_5pADqErCcDyQA2UArBn86DgiUZeOJqNlI42TKZRuTDtqJQ38yg5Lo1zSCGS9QQfUxZ4nuiApJj7klqiLvUensMieHC5_SIfMl6McdhJTvGHtSRXroJh-G7-pnznCV-72OS8-oH7GUCxcu1QerrzJJvUPNBUC

Re: [Freesurfer] Recon-all-clinical pipeline

Dear Pauline, Did the skull stripping fail? What does norm.mgz look like? Cheers, /Eugenio -- Juan Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lieshout, P.B. van (Pauline) Date: Thursday, March 20, 2025 at 10:40 AM To: freesurfer@nmr.mg