Can you try to add '-canorm' to your 'recon-all -autorecon1' command line?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Ni, Zhen (NIH/NINDS) [C]
Sent: Wednesday, March 12, 2025 10:28 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] autorecon1_norm.mgz not found
E
Can you attach your recon-all.log?
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Ni, Zhen (NIH/NINDS) [C]
Sent: Wednesday, March 12, 2025 7:56 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] autorecon1_norm.mgz not found
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Hello,
I'm u
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Hello,
I'm using the command "recon-all -autorecon1 -subjid $SUBJECTNAME".
After about 2 hours, there are a few mgz and other files generated in the /mri
directory, however, I got an error message:
WARNING: entowm has very low volumes so not using it
Can you also add '-gcareg' to your command line?
I'm not sure if any other steps are needed. If that doesn't work, can you run
the full recon-all pipeline? Use directive '-all' instead of '-autorecon1'.
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Ni, Zhen (NIH/NINDS) [C]
Sent: We
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Hello FreeSurfer team,
I’m trying to create a lobe segmentation for white matter. I first created the
annotation files using mri_annotation2label with --lobesStrict for each
hemisphere, and then tried to map the lobe parcellation onto segmentation
v
