[Freesurfer] dt_recon and corregistration (2)...

2025-02-24 Thread Gonzalo Rojas Costa
External Email - Use Caution Hi: The error is in a misalignment between the FA and CC_Anterior section. Sincerely, Gonzalo M. Rojas-Costa Adjunct Assistant Professor School of Medicine Finis Terrae University ___ Freesurfer mailin

Re: [Freesurfer] Optimizing FreeSurfer for Mouse brain

2025-02-24 Thread Douglas N. Greve
Sorry, we don't have that ability. There might be someone out there who has done this (it was done for monkey) On 2/16/2025 11:17 PM, Ramesh Babu wrote: External Email - Use Caution Dear Experts, Could you please suggest to me how to optimize FreeSurfer for 3D MRI Mouse Brain analys

[Freesurfer] Licensing & permission for publication

2025-02-24 Thread Brown, Tanya
External Email - Use Caution I am writing on behalf of our research team regarding our upcoming publication of our study, in which we would like to include results figures that were output from Freesurfer software (specifically the fsaverage template in Freesurfer). As we prepar

Re: [Freesurfer] histo atlas and sTIV

2025-02-24 Thread Douglas N. Greve
For what it is worth, this is the same thing that v8 generates (we just call it sTIV) On 2/12/2025 9:47 AM, Iglesias Gonzalez, Juan E. wrote: Dear Antonio, NextBrain provides the ICV via SynthSeg 😉 Cheers, /Eugenio -- Juan Eugenio Iglesias http://www.jeiglesias.com *From: *freesurfer-bo

Re: [Freesurfer] Licensing & permission for publication

2025-02-24 Thread fsbuild
External Email - Use Caution  Someone familiar with legal/licensing issues can check the terms of license found here,https://secure-web.cisco.com/1NpU4HWkbrw7VB72lxFKWX3QRK_rGCpFVO86h8MKvUYlzLrPl9cVXEuvJ5zJfQn75fRQqypfIKFtuNAQAYGZOGiCLwjyHj-kDq8pn0hvnC6ptghHi66wRjJZ0TXDNnCUw0WaXw

Re: [Freesurfer] Inquiry Regarding FreeSurfer Usage in Clinical Trials

2025-02-24 Thread fsbuild
External Email - Use Caution  If you have not looked at the Freesurfer license terms (which you agreed to when you downloaded the software),https://secure-web.cisco.com/1TLtJ8aYiTR8TmbT0XIgGWuiazFxBl5kXBTSkbdLnaoMDDCGrCYU0HiPG1Rd2aYMgX_f_VY2luydHczqDxUBDzhZEwbacG4qp6qwiZPMmbXKGv0

Re: [Freesurfer] *** buffer overflow detected ***

2025-02-24 Thread Brunno M. de Campos
External Email - Use Caution That is clarifying, thank you very much! Brunno M Campos University of Campinas Em dom., 23 de fev. de 2025 às 01:51, fsbuild escreveu: > External Email - Use Caution > > > If I understand the recon-all script correctly, the default is to r