[Freesurfer] Hippocampus and amygdala segmentation

External Email - Use Caution Dear Eugenio, My name is Miguel. I am currently processing data of the ABCD Study using FreeSurfer. In our pipeline, we also include the specific FreeSurfer segmentations for the hippocampus and amygdala. As an additional step, we would like to use the

[Freesurfer] Clarification on co-registration using bbregister

External Email - Use Caution Dears, I'm Gabriella, a PhD student in Neuroscience and Imaging. I am currently working on coregistering anatomical scans with DTI scans (FA and MD maps) using bbregister. However, there are some details in the pipeline that I find unclear. First, is

Re: [Freesurfer] *** buffer overflow detected ***

External Email - Use Caution  Please list: > version of freersurfer you are running> OS name and version you are running> amount of RAM on your machine - R. On Feb 20, 2025, at 05:58, Brunno M. de Campos wrote:External Email - Use CautionDear

Re: [Freesurfer] *** buffer overflow detected ***

External Email - Use Caution Hi, thanks. > version of freersurfer you are running: 7.4.1 > OS name and version you are running: Ubuntu 22 > amount of RAM on your machine: 32 gb Best, Brunno M Campos University of Campinas Em qui., 20 de fev. de 2025 às 08:47, fsbuild escreveu

[Freesurfer] *** buffer overflow detected ***

External Email - Use Caution Dear all, I run my script for longitudinal processing based on: individual processing (recon-all -i) + base image creation (recon-all -base) and longitudinal processing (recon-all -long). In some cases (not always), the process terminates with errors,

Re: [Freesurfer] volumes and surfaces misalignment in freeview

As the printout says, the surface file does not contain any volume information in the header, so it may not be aligned properly with the volume. But I’m not sure why it doesn’t have it. Would it be possible to send me one of the volume files and the surface files you used in the command? Ruopen

Re: [Freesurfer] Unable to download version 8.0.0

External Email - Use Caution  The web pages are being updated in advance of the release, but the download links won’t go live until sometime after 8.0.0 has been officially announced on the mailing list. - R. On Feb 20, 2025, at 07:11, Ziming Cui-MSBA23A wrot

[Freesurfer] Unable to download version 8.0.0

External Email - Use Caution Hello all, I'm trying to download version 8.0.0 of the “macOS X darwin_arm64 (64b) PKG installer”, but it says “Not Found” no matter what I try. Is there anything I can do? Best, By Ziming Cui ___ Freesur