[Freesurfer] WG: [ext] Re: Freeview crash

2025-01-03 Thread Tietze, Anna
It’s there: licence.txt located in: /Applications/freesurfer/7.4.0/license.txt (can be read, as recon-all works) Or do you mean /Applications/freesurfer/license.txt? Von: freesurfer-boun...@nmr.mgh.harvard.edu mailto:freesurfer-boun...@n

[Freesurfer] How to Plot Surface with ROI Boundaries Using Harvard-Oxford Brain Atlas?

2025-01-03 Thread Zeng, Xinglin
External Email - Use Caution Dear Community, I am currently working on visualizing ROI boundaries on the brain surface using the Harvard-Oxford brain atlas. My goal is to generate a surface plot that overlays ROI boundaries from the atlas in a clear and accurate manner. I also tr

Re: [Freesurfer] [ext] Re: Freeview crash

2025-01-03 Thread Dicamillo, Robert
Hello Ruopeng, Just FYI - users should no longer have to put a license.txt under the freesurfer distribution; that fallback location should remain for backwards compatibility with old freesurfer setups. Apps/commands should first always check if FS_LICENSE is set in the environment and test i

Re: [Freesurfer] [ext] Re: Freeview crash

2025-01-03 Thread Tietze, Anna
External Email - Use Caution Hi Ruopeng, It works with the app when I move the licence.txt! It doesn’t work from the terminal so far, but this helps a lot. Thank you very much! Best, Anna From: on behalf of "Wang, Ruopeng" Reply-To: Freesurfer support list Date: Friday, 3.

Re: [Freesurfer] [ext] Re: Freeview crash

2025-01-03 Thread Wang, Ruopeng
You can run freeview from the the command-line by directly calling the binary in the app bundle, for example: $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview On Jan 3, 2025, at 3:58 PM, Tietze, Anna mailto:anna.tie...@charite.de>> wrote: External Email - Use Caution Hi Ruopeng

Re: [Freesurfer] [ext] Re: Freeview crash

2025-01-03 Thread Wang, Ruopeng
I mean /Applications/freesurfer/license.txt. On Jan 3, 2025, at 11:36 AM, Tietze, Anna mailto:anna.tie...@charite.de>> wrote: It’s there: licence.txt located in: /Applications/freesurfer/7.4.0/license.txt (can be read, as recon-all works) Or do you mean /Applications/freesurfer/license.txt? V

Re: [Freesurfer] [ext] Re: Freeview crash

2025-01-03 Thread Wang, Ruopeng
To run as an app bundle, since there is no global environment settings, you need to put the license file in /Applications/freesurfer folder. Then you should be able to load data. On Jan 3, 2025, at 12:47 AM, Tietze, Anna mailto:anna.tie...@charite.de>> wrote: External Email - Use Cauti

Re: [Freesurfer] [ext] Re: Freeview crash

2025-01-03 Thread Tietze, Anna
It’s there: licence.txt located in: /Applications/freesurfer/7.4.0/license.txt (can be read, as recon-all works) Or do you mean /Applications/freesurfer/license.txt? Von: freesurfer-boun...@nmr.mgh.harvard.edu Im Auftrag von Wang, Ruopeng Gesendet: Freitag, 3. Januar 2025 16:58 An: Freesu