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Hello FreeSurfer Developers,
We are completing quality control in FreeView of two longitudinal datasets
(participants age: 9-25) and have noticed that in one dataset the brains look
much more 'spiky' than in the other dataset. More than half of the b
This sometimes happens with noisy data. The difference in SNR between
those two scans is a factor of 2. What is your recon-all command line?
Can you send pics of the brain image with the surface overlaid on a
slice with one of the spikes? What does the white surface look like in
those regions?
I think this is the bug where you need to set the environment variable
FS_ALLOW_DEEP to 1, eg,
export FS_ALLOW_DEEP=1
or
setenv FS_ALLOW_DEEP 1
Try that and then rerun
On 12/11/2024 12:14 PM, Huang, Yujing wrote:
Can you add those options as shown in the output ‘-fix-ento-wm
-transfer-bas
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bbregister is known to be really could at registering functionals to T1w
image. I am curious as to whether synthmorph performs close to bbregister
or not when registering epi to the structural.
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