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Thank you for the reply,
I need to create a mask of each segmented subfield (segmented with freesufer)
and then I need to use the obtained mask in FSL to do a DTI. However, I am not
sure about the pipeline I have to follow to do so. So far I have been
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Dear freesurfer experts,
I was trying to use synthseg for segmenting and parcellating a
heterogeneous brain with lesions. It is advised in the freesurfer synthseg
webpage to use mri_WMHsynthseg command for these cases. How ever when I
tried to run the
Use orig.mgz
On 6/27/2024 9:47 PM, Quanjiang Liu wrote:
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Sorry to bother you again. I want to know that the standard input to
get the standard lh.seghead and rh.seghead. Is it the T1.mgz or the
brain.mgz in the mri folder which is one of the output files
It can't find the file struct.nii. You have to give it the full path to
the file. It looks like $Users is not set to anything (blank)
On 6/28/2024 12:03 AM, Lydia Luck wrote:
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Hello-
I am trying to do recon-all on my brain MRI and I’ve rewritten it so
man
Try looking at it in freeview first. Some of the regions may be small,
so you may have to hunt to get them. FYI you can specify nii as the
output of mri_binarize
On 6/28/2024 5:30 AM, Savoia, Alice (Stud. FPN) wrote:
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Thank you for the reply,
I need to cre
In freeview I believe you can right click on a given label in the list in the
left-hand pane and “go to centroid” or something is an option
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Douglas N. Greve
Sent: Friday, June 28, 2024 9:22 AM
To: freesurfer@nmr.mgh.harvard
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Dear Freesufer teams,
Does anyone have any recommendations to correct for alpha inflation when
doing the multiple comparisons in freesurfer? We are trying to avoid using
the Bonferroni Correction so any recommendations for ways beside that would
be gre
Have you seen this page?
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm
On 6/28/2024 9:48 AM, Emma Harper wrote:
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Dear Freesufer teams,
Does anyone have any recommendations to correct for alpha inflation
when doing the mul
Dear Naveen,
WMH-SynthSeg is currently only available in the development version of
FreeSurfer.
I have updated the wiki with this information.
Apologies for the inconvenience.
/E
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Byripud
