[Freesurfer] Recon all clinical with multiple input scans

External Email - Use Caution Dear sir/madam, I have been trying out the new recon-all-clinical algorithm. In the FreeSurferWiki on recon-all-clinical, it is not specified if I can add multiple scans (T1, FLAIR and T2, for instance) of the same individual in the recon-all-clinic

[Freesurfer] Requesting pass code for FS_7_2_0_ubuntu_18_04_06.ova.7z

External Email - Use Caution I found there is a pass code required to unzip this file. Could someone send me this code? Thanks very much. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/

[Freesurfer] buffer overflow detected in mris_expand

External Email - Use Caution Hello, I am running some freesurfer processes (freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275) via fmriprep 23.1.3 (singularity container version) and I'm getting the error below when running the mris_expand command. Below is the output from frm

[Freesurfer] Create an lta or xfm file for mri_vol2vol

Dear group, I have 2 images (preop t1 and postop CT), and a 4x4 registration matrix (as a text file). Is there an easy way to create an lta or xfm file to use it with mri_vol2vol? Thanks! Noam ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Recon all clinical with multiple input scans

Dear Pauline, Thanks for the interest in our new pipeline! You can only run one scan at the time (but that scan may be of any resolution / contrast). Cheers, /E -- Juan Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lieshout, P.B. van (Pau

[Freesurfer] TRACULA error: lowb_brain_mask.bbr.nii.gz

External Email - Use Caution Hi FreeSurfers, I am attempting to run tracula on longitudinal DTI data however during trac-all -prep the process fails because it does not generate lowb_brain_mask.bbr.nii.gz from mri_concat. #- /Applications/f