Dear Pauline,
Thanks for the interest in our new pipeline!
You can only run one scan at the time (but that scan may be of any resolution / 
contrast).
Cheers,
/E

--
Juan Eugenio Iglesias
http://www.jeiglesias.com

From: freesurfer-boun...@nmr.mgh.harvard.edu 
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Lieshout, P.B. van 
(Pauline) <p.b.vanliesh...@umcutrecht.nl>
Date: Monday, November 13, 2023 at 03:51
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Recon all clinical with multiple input scans

        External Email - Use Caution
Dear sir/madam,

I have been trying out the new recon-all-clinical algorithm. In the 
FreeSurferWiki on recon-all-clinical, it is not specified if I can add multiple 
scans (T1, FLAIR and T2, for instance) of the same individual in the 
recon-all-clinical command, similar to the old recon-all command. Is this 
possible in your new algorithm?

Thanks in advance,

Best,

Pauline van Lieshout

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