Dear Dawn,
Integrating the hippocampal subfields into SynthSeg in on the to-do list, but
it’s tricky due to differences in resolution.
In terms of robustness, we are making progress – but I like your suggestion of
adding defacing to the list of “artifacts”! We’ll take it into consideration 😊
Che
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Hello,
I am working with a pediatric sample for which we are seeing many segmentation
errors using the standard recon-all pipeline (version 7.3.2). Running synthseg
on the same input files improves the segmentations dramatically, and I would
like to
Dear Maya,
You can use then -synthseg flag with recon-all to use SynthSeg instead of the
standard algorithm 😉
For fmriprep: which is the offending volume? There are very minor differences
with the standard recon-all output.
Cheers,
/E
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From: fre
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Hi Woo-Suk,
I was able to make the change however, I am still receiving the same error.
mri_convert -at
/Users/corpuscallosum/Desktop/TRACULA/RRD/R001A/R001A/dmri/xfms/anatorig2diff.bbr.lta
-rt nearest
/Users/corpuscallosum/Desktop/TRACULA/RRD/R00
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Hi there,
I am currently going through the dt_recon tutorial on your website and I
just have a quick question regarding the recon-all and dt_recon commands on
freesurfer.
For me to process dt_recon, my understanding is that I must process
recon-all fi
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Hi Lauren.
Would you send me the trac-preproc ( /your path to/freesurfer/bin ) file,
you corrected?
best regards
Woo-Suk, Tae
On Tue, Oct 31, 2023 at 4:29 AM Lauren Stephens
wrote:
> External Email - Use Caution
>
> Hi Woo-Suk,
>
> I was ab
