Re: [Freesurfer] Freeview quit unexpectedly

The answer to this is question ‘ opening an image from the gui ‘ is yes. The image only opens when I open from the command line Reuben A. Get Outlook for iOS From: fsbuild Sent: Tuesday, December 20, 2022 7:56:12 AM To: freesurfer@nmr.mgh.

Re: [Freesurfer] lh.pial lh.pialT1n same file?

Hi Rene, Can you send your recon-all.log? It is in the ‘scripts’ directory. ‘lh.pial’ should be created as a link to ‘lh.pial.T1’ if you are not processing T2/FLAIR. If you go ‘surf’ directory, do ‘ls -l lh.pial*’, what does it shows? Best, Yujing From: Renew Andrade Sent: Tuesday, December

[Freesurfer] Password to decrypt 7zip Virtualbox Image

External Email - Use Caution When I try to extract the 7zip containing the virtualbox image with freesurfer, it prompts me for a decryption password. I can't find it anywhere. Could you help? ___ Freesurfer mailing list Freesurfer@nmr.mgh

[Freesurfer] questions about mri_glmfit

External Email - Use Caution Dear Freesurfer experts, I have 2 questions about the command mri_glmfit and I appreciate your help. 1- Are there any settings or flags that can be used in mri_glmfit to restrict statistical comparison of surface based analysis to specific ROIs rather t

Re: [Freesurfer] Freeview quit unexpectedly

After you load the image from the command-line, can you then load more images from the GUI? Ruopeng On Dec 20, 2022, at 3:23 AM, Addison, Reuben mailto:raddi...@mghihp.edu>> wrote: The answer to this is question ‘ opening an image from the gui ‘ is yes. The image only opens when I open from t

[Freesurfer] Tetrahedral mesh

External Email - Use Caution Hi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method. -Don ___ Freesurfer mailing list Freesurfer@nm

Re: [Freesurfer] mri_sclimbic_seg patch issue?

External Email - Use Caution Hi all, I have the same issue on Ubuntu 22.04, patch is installed. Many thanks, Yann > On 20 Dec 2022, at 04:29, daedalu...@aol.com wrote: > > External Email - Use Caution > > > Dear FreeSurfer Developers, > > We are interested i

Re: [Freesurfer] questions about mri_glmfit

On 12/20/2022 12:22 PM, James Brown wrote: External Email - Use Caution Dear Freesurfer experts, I have 2 questions about the command mri_glmfit and I appreciate your help. 1- Are there any settings or flags that can be used in mri_glmfit to restrict statistical comparison of surfac

Re: [Freesurfer] Tetrahedral mesh

Why not samseg? On 12/20/2022 12:50 PM, Donatas Sederevičius wrote: External Email - Use Caution Hi, is there a tool to make a tetrahedral mesh of the brain from the MRI T1w image and/or its whole-brain segmentation? I need it for the finite elements method. -Don _

Re: [Freesurfer] mri_sclimbic_seg patch issue?

Hi Randy and Yann, For this fix you will have to update the surfa package that ships with Freesurfer. You can do this by: fspython -m pip install --upgrade surfa Best, Avnish From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Yann Quidé Sent: Tuesday,