[Freesurfer] slice timing for multiband fMRI

External Email - Use Caution Hi everyone, We are currently piloting an fMRI measurement with multiband sequence on a 3T Siemens scanner to increase resolution, but I don't know how to do the slice timing correction: I assume, that I have to use a slicedelay file instead of the

Re: [Freesurfer] Pass code to expand the archive of Free surfer 7.2.0

External Email - Use Caution Hello Krystaly, Sending the info to your email shortly. - R.​On Mar 28, 2022, at 01:15, krystaly wrote:External Email - Use CautionDear Free Surfer expert,Would you please send me the pass code for opening the archi

Re: [Freesurfer] WM error near the right putamen

External Email - Use Caution Can you please help me with which measures are not valid in this case? Are the cortical (e.g. thickness of ctx-rh-medialorbitofrontal) and subcortical measures (e.g. right pallidum) both invalid? aseg.mgz looks nice and aseg+aparc.mgz looks also nice. O

[Freesurfer] Removal from Mailing list

External Email - Use Caution Hello, Can I please be removed from this mailing list? I no longer work in a position related to freesurfer. Thanks! Warm Regards, Haniya Saleh Haniya Saleh | OVC IT Technician - Client Productivity

Re: [Freesurfer] lh.white surface co-registration

External Email - Use Caution Thanks Douglas. I have read the freesurfer official page on surface co-registration, but I still can't grasp where the .lta file comes from in case of surface co-registration. I suspect that you can't use the same lta file that you used for vol2vol.

Re: [Freesurfer] Tkregister2 not opening GUI

External Email - Use Caution I have permission to read and write. The lh.white does not exist as I have only ran the recon-all -i /Volumes/CopyPaste/fMRI/fMRI/Freesurfer/"$i".anat.nii.gz -subjid "$i"_FS I wanted to verify the registration before moving on to the other stages, an

[Freesurfer] Advice: changing Freeview light source?

External Email - Use Caution Dear Freesurfer Community, I use Freeview to render 3D views of overlays on cortical surfaces. For my current processing, the absolute scale of the overlay map is important, and this absolute scale is distorted / marred by the shading that Freeview a

[Freesurfer] Seeking help:error in FreeSurfer license key and Freeview

External Email - Use Caution Dear FreeSurfer experts, I have reinstalled FreeSurfer 6 in my new system following the FreeSurferes. I saved “license.txt” in /usr/local/freesurfer. I am getting the following error. ERROR: Invalid FreeSurfer license key found in license file /usr/

[Freesurfer] [Moved to Europe Friendly Time Zone] DPABINet Brain Network Online Training Camp

External Email - Use Caution *[Given that most registered trainees are from Europe, the training time was moved to Europe friendly time zone]* The human brain is one of the most complex network systems in the universe, consisting of about 1011 neurons and about 1015 connections. S