[Freesurfer] Linear mixed model for longitudinal data

External Email - Use Caution Dear Kersten, Thank you for your answer, I have some follow-up questions to the first two points before I can move on. 1) Regarding family-relation, since three random effects may not work, did you mean that a simpler model with 2 random effects (inte

[Freesurfer] Using vol2surf to fsaverage.

Hi all, Usually when I want to map volume data to the fsaverage surface, I use mri_vol2surf with a registration that transforms the volume into the space of the subject's orig.mgz and with --trgsubject set to 'fsaverage'. Currently, I have some volumes that have already been transformed to the

Re: [Freesurfer] SAMSEG Lesion images not written

Hi Randy, "seg.mgz" is the "hard segmentation", with lesion labeled as 99. You have all the volumes in "samseg.stats". If you want segmentation maps (values between 0 and 1), you should add the flag --save-posteriors to run_samseg. They will be saved in the samseg output directory under the "

[Freesurfer] Research Assistant Position Available at the Ohio State University Department of Psychology (MINDSET Lab)

External Email - Use Caution Research Assistant Position Available at the Ohio State University Department of Psychology. Looking for someone with prior experience in MRI. Familiar with structural preprocessing and/or other modalities. Comfortable with coding. More details below

[Freesurfer] Custom Freeview Color Map (not Lookup Table)

External Email - Use Caution Hi, I’d like to load in a custom color map to be used in color percentile-scaled functional images into FreeView (version 3.0; Build Aug 11, 2020). I can’t seem to find a reference for defining and loading a custom color map. I have done this for