Hi Knut
Including Ron in the conversation. Of course outside striate cortex the mapping
between folding and function isn’t so straightforward.
And Happy New Year to all!
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Knut J Bjuland
Sent: Saturday, January 1, 2022 8:03 AM
To:
You did not create the contrast matrix correctly. There needs to be a
column for each subject, then a column for time point1 and one for time
point 2. Use DOSS (defaults to DODS). Also, I think you could compute
tp2-tp1 if you wanted to (makes things easier).
On 12/14/2021 5:58 PM, std...@virg
Please sent the log file
On 12/15/2021 7:28 AM, xuan wrote:
External Email - Use Caution
Dear FreeSurfer Experts,
I am attempting to recon-all for my one subject for testing on my lab
server. However, I get following error:
ncopen: filename "./tmp.mri_nu_correct.mni.13492/nu1.mnc":
On 12/15/2021 8:36 AM, Laura Willers de Souza wrote:
External Email - Use Caution
Dear Douglas,
Again, thanks for the reply.
Please check if I understand correctly:
* First I do the contrast [0 0 -1 1] to test if there is an
interaction between diagnosis and cortisol; if ther
Can you check to make sure the disk is not filling up?
Also, see if subject/mri/tmp.mri_nu_correct.mni.13492/nu1.mnc exists and
is of a size similar to orig.mgz
On 12/15/2021 7:27 PM, xuan wrote:
External Email - Use Caution
Oops, forget about the log file.
Here it is
Assuming you used y = pre-post, then the correlation is the correlation
between y and age, so if it is positive it means that the pre-post
difference is increasing with age
On 12/16/2021 2:45 PM, PDMD SRALab wrote:
External Email - Use Caution
We are using the paired analysis appr
Chris/Ruopeng, you can use https://transfer.partners.org
On 12/17/2021 11:41 AM, Christopher Panks wrote:
External Email - Use Caution
Hi Ruopeng,
I can send the niftis to an individual, but I cannot post them to a
listserv.
Version info:
freesurfer-linux-ubuntu18_x86_64-dev-2021
Not sure what is going on here. Can you run it without the -parallel flag?
On 12/19/2021 3:37 AM, Atsushi Yamaguchi wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to run recon-all on structural MRI data of Human
Connectome Project (ex. T1w.nii.gz fro
Try mri_segcentroids. Run it with --help to get docs
On 12/20/2021 3:34 AM, Julie Ottoy wrote:
External Email - Use Caution
Hi Doug,
Just checking in with the question below. Does Freesurfer have such an
option?
Thanks,
Julie
On Tue, 14 Dec 2021 at 18:38, Julie Ottoy
wrote:
You have to make sure that you click in the region that you want to keep
(ie, you should be able to see the cursor in your region)
On 12/20/2021 8:11 AM, Alison McDonnell wrote:
External Email - Use Caution
Hi Freesurfer,
I am currently trying to make a patch to make a flat map. I ma
On 12/20/2021 9:20 PM, Laura Willers de Souza wrote:
External Email - Use Caution
Dear Douglas,
Thanks so much for your answer.
Could you check if the following commands to perform ROI analysis with
GLM are correct?
*1.* Create the table with the volumes of the hippocampal segmen
Yes, that looks correct
On 12/25/2021 11:07 AM, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Sorry, I wrote this previous email from a different adress because I
did not receive emails from the freesurfer's support list 😅
Thank you!
El sáb., 25 dic. 2021 17:01,
It should use whatever matlab is in your path. It looks like it is
expecting to find it in /usr/local/freesurfer/stable5_1_0/matlab/
which is kind of strange since you are using FS6. Look in your cshrc or
bashrc file to see if that is being added to your path and if so remove
it. What happens if
13 matches
Mail list logo
