[Freesurfer] Using several scanners as covariates in Qdec

2021-12-15 Thread Nilab Nasrullah
External Email - Use Caution Hello, I am sending you this email again since it has not been posted and I haven't got a response from you. I am doing a cortical thickness analysis for a research project in Qdec. Since we have gathered the MRI-scans from different sites and used

[Freesurfer] nu_correct error

2021-12-15 Thread xuan
External Email - Use Caution Dear FreeSurfer Experts, I am attempting to recon-all for my one subject for testing on my lab server. However, I get following error:  ncopen: filename "./tmp.mri_nu_correct.mni.13492/nu1.mnc": Not a netCDF file miopen: MINC package entry point Err

Re: [Freesurfer] Questions about contrasts

2021-12-15 Thread Laura Willers de Souza
External Email - Use Caution Dear Douglas, Again, thanks for the reply. Please check if I understand correctly: * First I do the contrast [0 0 -1 1] to test if there is an interaction between diagnosis and cortisol; if there is, I do DOSS [1 -1 0], if there isnt’t, I conti

[Freesurfer] Please remember to cite FreeSurfer in your OHBM abstract. Thanks!

2021-12-15 Thread Douglas N. Greve
___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you i

[Freesurfer] Cohen´s D effect size

2021-12-15 Thread Steve Petersen
External Email - Use Caution Dear Freesurfer experts, I am attempting to estimate the Cohen's D effect size of significant clusters using the suggested command

[Freesurfer] Fw:nu_correct error

2021-12-15 Thread xuan
External Email - Use Caution Oops, forget about the log file.  Here it is -- Original -- From: "xuan"

Re: [Freesurfer] Longitudinal BASE, missing data and potential time skew?

2021-12-15 Thread Jacob Levenstein
External Email - Use Caution Good evening Martin, Thank you for the quick reply and for the considerations. Much appreciated, Jacob Message: 9 Date: Wed, 15 Dec 2021 06:55:48 + From: "Reuter, Martin,Ph.D." Subject: Re: [Freesurfer] Longitud

Re: [Freesurfer] Tracula error

2021-12-15 Thread Nasiriavanaki, Zahra,M.D.
Hello, I wanted to follow up on this question. I appreciate it much if you could suggest me any solutions. I checked my space and I have 3.5 T free space, so It’s definitely not a space problem. Thanks, Mona On Dec 14, 2021, at 12:59 PM, Nasiriavanaki, Zahra,M.D. mailto:znasiriavan...@mgh.ha