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Thank you so much!
> On Dec 7, 2021, at 12:06 PM, Zollei, Lilla,Ph.D.
> wrote:
>
> Hi Fateme,
> Infant Freesurfer takes a single input image so there is no rawavg file
> created at the beginning of the pipeline. You should be able to replace
> raw
Dear Michael,
Your code will create 3DT2.FSspace.mgz which is at 0.55mm resolution but with a
rotation/translation in the header to overlap the T1 in RAS space.
You can now run
mri_convert [lr]h.hippoAmygLabels-T1.v21.[hierarchy].mgz
[lr]h.hippoAmygLabels-T1.v21.[hierarchy].resampled.mgz -r
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Hello Jürgen,
Try running the bash shell from the terminal, e.g., before running anything
type,
$ bash
- and then try your command again.
If that works then I would set your login shell to bash (as the default is
dash).
- R.
On Dec 7, 2021, at 01:46,
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Hi,
Sorry if this email has been seen. I got an automatic response that my previous
emails were in the queue waiting to be approved due to the email size, but
haven't seen an approval yet. So, I am trying again without the email
attachments (both re
Dear Lisa,
It’s difficult to tell without seeing the logs, but it seems like you ran out
of RAM memory?
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On Dec 8, 2021, at 15:57, Taylor, Lisa
mailto:ltayl...@hs.uci.edu
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Hi Juan,
My email response to you has the attachments of the log files, but it once
again is being held for moderator approval. Not sure how often or who checks
it, but my last few emails are there waiting 🙂
Thank you again for your help. Hopefully,
Hi Mona - Here's how you add something to your Unix path:
https://unix.stackexchange.com/questions/3809/how-can-i-make-a-program-executable-from-everywhere
In your case you'd replace /path/to/file with $ANTSPATH.
Anastasia.
From: freesurfer-boun...@nmr.mgh.harva
Dear FreeSurfers - There's a new script in the development version called
dmri_bids_config. You can get it here:
https://raw.githubusercontent.com/freesurfer/freesurfer/dev/scripts/dmri_bids_config
There is documentation here:
https://surfer.nmr.mgh.harvard.edu/fswiki/dmri_bids_config
It will pa
