External Email - Use Caution Hi Juan,
My email response to you has the attachments of the log files, but it once again is being held for moderator approval. Not sure how often or who checks it, but my last few emails are there waiting π Thank you again for your help. Hopefully, the email can be approved with the log files so they can be reviewed. Lisa ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu> Sent: Wednesday, December 8, 2021 1:00 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Hippocampal Subfield data not populating Dear Lisa, Itβs difficult to tell without seeing the logs, but it seems like you ran out of RAM memory? Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://secure-web.cisco.com/1sNxoZ5Oy64QvlP-IJ_xchsLgpk3s4tD-j00cjSUwEW380zHaYb1mtIxdgSCh6_SSp6mSkkA_mn_pG_lFxiMaSl3KnFV6ZqDh4BAH2-qgyzf6dwN8fvkWYbggXAbVSCQUf8E6d_uc5j6mkdeWs__RKlCJSqEA0s2JYp2v6eA8gRAzPZ1bPTZwyZ3-DohQjrVuKwgVglT57UhcZIMpZpp6HPjTDYJeSvDpSvndwvKOFxZyGgf61pgK6wzYpjyHLxG08iN2h8T9m8HU3Q93XrpsmATsoQLt0qdhEDJjTAov3Y7gEssCcqNM1DcHN6W6zV14/http%3A%2F%2Fwww.jeiglesias.com<https://secure-web.cisco.com/1rhicNpMnyP7TNZgTZPYU6Dz2K8GgebAwxRX5POw1j5ie8XMNSbhydwe3ZZnoLhHaxo3ZDCOxvx-bo88EJTocbgVBGsTil14gqJtdwY0Jubf9LZn5mVNi_YPy0icUssmQcVdwV6d5DD5nLZho7Bl3m83CSazhGzKmwCcVeUNNzpydsYJ1-zxvPgFgK9ALC3Q7E0QHhb95p17uUATKECyNiqCj5DZDbWRjdjwBQGPzYqKwNBaCOrij9zL0IaHQsYX-oKHrDGqVbGw70sQ31G8YbvLxPLEd6hcw4G7NbhEJRnwyzjGIA3xQYSj_5wnjfLb_/https%3A%2F%2Furldefense.com%2Fv3%2F__http%3A%2F%2Fwww.jeiglesias.com__%3B%21%21OLgoXmg%21Bk3d3AdL3kcsK-4SYxHmwBqEccK3wF9ULrNZV2Hun_8hJvh279oie4WhXA46alLElsY%24> On Dec 8, 2021, at 15:57, Taylor, Lisa <ltayl...@hs.uci.edu<mailto:ltayl...@hs.uci.edu>> wrote: External Email - Use Caution Hi, Sorry if this email has been seen. I got an automatic response that my previous emails were in the queue waiting to be approved due to the email size, but haven't seen an approval yet. So, I am trying again without the email attachments (both recon all and hippocampal subfield log files) to see if it might be more efficient this way. Running the hippocampal-subfields-T1 argument for some reason is not populating the data I need. My recon-all log says it was exited without error, and my hippocampal subfield log file seems to have run smoothly except for this one line that I am not sure is telling or not: /data/opt/apps/freesurfer/6.0.1/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 46: 2066 Killed "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML $args Please advise! Thank you. Lisa ________________________________ This message may contain confidential information and is for the sole use of the intended recipient(s). If you are not the intended recipient, do not use, distribute, or copy this e-mail. Please notify the UC Irvine Health β Compliance and Privacy Office via email at hacomplia...@uci.edu<mailto:hacomplia...@uci.edu> or by phone 888-456-7006 immediately if you have received this e-mail in error. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://secure-web.cisco.com/1SqPCPtg122hw1w8Khs2RSy7T-GHhZB9VrYCRWjpZfmB_jX4o7lF04QZKoonUG-XN2vzwRJe97aE2Cdt6tFaI2ioz4GWo3lP3FM4f7MQTMEXxPE9Ce4-TAa8ExXWUSVFlwf5zo0O6WIlKojgSS36BzdVNRC8kvJerl1ux6hSlx63lc12IutK1gaH1--D4epBl-XUV0aBuPzDN6toJWnqEyTZBwVRMny96wPj65oe4TbqSsBWey4aTsJzPX90ptPgvkiftLLGkCDaOrvF5S5-QJRUG6brzJrp8Kd40zd9_QXrK4v_nVaC_mYzi2tQ658lB/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer<https://secure-web.cisco.com/13u3OU_W723LKU9CtGAydRjsEdrrElPKoHPX0CPmCwXixzgBLfIXG92kNVhHvue60Ud1HeelLWlbf6tGeXIx5kboujIeJs6EW02hUyBYaK1UDwqtXqNjW6HzipiYI5W3e2_RNoQx95r7_WfTIc9JJ1fYMPTPTR4pxakQ1OpRJplYuRtK98famGoU05ZF73albgd6i1Y-iQZvjvyF_jg3UqtqP061jgBCmAZHN683IbPUrBtX7nYhzs6miHau26snf7kgkLhkZFZ3AGc5IcmNznBbYNBcrFPF4_WPT3TeABP8x08ph9JySbzOB4NkXbWc3/https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer__%3B%21%21OLgoXmg%21Bk3d3AdL3kcsK-4SYxHmwBqEccK3wF9ULrNZV2Hun_8hJvh279oie4WhXA46dDsXnDc%24> . 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