[Freesurfer] mri_surf2surf lh.area does not match surface (148208, 146833)

2020-12-01 Thread 1248742467
External Email - Use Caution Hello, Fs When I run the following command: mri_surf2surf --srcsubject HLN-12-2 --sval area --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/HLN-12-2-target/area --trg_type curv --hemi lh

Re: [Freesurfer] Freesurfer skullstripping error

2020-12-01 Thread LIN, Yezhe
External Email - Use Caution Thank you so much for sharing the ideas, Bruce! -- Best regards, Yezhe   -- Original -- From:  "freesurfer-request";https://secure-web.cisco.com/1z9iluK8C-0HIf0UFksBm0ZUhHli5Vc4eifBra2dUWisaO

[Freesurfer] Aligning functional and structural scans with FsFast

2020-12-01 Thread Karan Desai
External Email - Use Caution Hi FreeSurfer developers, I have Freesurfer anatomical data from recon-all, and pre-processed functional data in NifTI format from FSL and you would like to use FsFast to align that data. What would be the best way to do that using FsFast? Is this po