Re: [Freesurfer] Tracula error: run list is longer than subject list {Disarmed}

External Email - Use Caution Hi Anastasia- Thank you for your reply! I will try another subject and see. Oshadi From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Yendiki, Anastasia Sent: Monday, November 2, 2020 11:05 PM To: Freesurfer

[Freesurfer] LGI quality control {Disarmed}

External Email - Use Caution Hello, I am using FreeSurfer 7.1.1 to run LGI and have done so successfully. I am now trying to quality check my data using tksurfer as described on the wiki tksurfer my_subject_id lh inflated -overlay lh.pial_lgi However the LGI overlay is not coveri

[Freesurfer] aparcstats2table

External Email - Use Caution hi I run in linux command:""" aparcstats2table --hemi lh  --subjects /home/team33/MRI4/subj10/stats --parc aparc.a2009s  --meas meancurv --tablefile /home/team33/ aparcstats.txt"

Re: [Freesurfer] Meta-analysing brain measure statistics across multiple cohorts using different versions of Freesurfer

External Email - Use Caution Hi, I am planning on meta-analysing the effects of regional and global cortical thickness + surface area, as well as subcortical volumes of 3 cohorts. Two of them have been processed using Freesurfer 5.3 and one one of them has been Freesurfer 6.0. Is

Re: [Freesurfer] Meta-analysing brain measure statistics across multiple cohorts using different versions of Freesurfer

Hello, It is not advisable to mix versions of FreeSurfer as results across different versions of FreeSurfer are expected to differ, even if by a little. We recommend that the same version of FreeSurfer be used to process every case in your dataset. If you were to proceed with an analysis of, fo

Re: [Freesurfer] aparcstats2table {Disarmed}

External Email - Use Caution Hi, Suppose the fsid of your subj10 is subj10 and you set SUBJECTS_DIR correctly to /home/team33/MRI4, the command should be aparcstats2table --hemi lh --subjects subj10 --parc aparc.a2009s --meas meancurv --tablefile /home/team33/aparcstats.txt I

[Freesurfer] Fwd: Welcome to the "Freesurfer" mailing list {Disarmed}

External Email - Use Caution Dear Free Surfer I followed the excellent video step by step instructions. At the last part of putting the code/ key into the terminal, I encountered the error message as below: no such file or directory. As such I think my set up was not complete.

[Freesurfer] Fwd: using CAT12 segmentation for PVC

External Email - Use Caution Dear, The segmentation using Freesurfer was incorrect, however we have a good segmentation from Cat 12. Can we use this segmentation for PVC in PETsurfer? Kind regards Donatienne ___ Freesurfer mailing list