External Email - Use Caution Hello,
I am using FreeSurfer 7.1.1 to run LGI and have done so successfully. I am now trying to quality check my data using tksurfer as described on the wiki tksurfer my_subject_id lh inflated -overlay lh.pial_lgi However the LGI overlay is not covering the entirety of the inflated brain. Specifically the medial frontal surface and some subcortical are not measured for LGI. Here is a link of the overlay images for a few subjects: https://secure-web.cisco.com/1FvGKanOWU0exqsmfZZWyCdCgTFgqf8kB2BXdsF-5A035k1rc5i2ECL9Bt-sn8Wd9sg8LgyvKPIHD_K3n3d8aIlOYT7vHfQVCA6sCq1NlzFrs_Vjn74CGIhg1nIjX_csnDAnz8kzCUBLMiTd7c6DTZvaQ5aM3UeKBq-PVh8O5XAwOUvbQ3_05ie7fb0YGRsg8Q2DrGwEWtgQCqpUnhvIPdA/https%3A%2F%2Fwww.dropbox.com%2Fs%2F9pt8rti4yjudrza%2FLGI_QC.png%3Fdl%3D0. I<https://secure-web.cisco.com/1yytrZan4Ml7C4NJTkc91uplhrETEPm4MAwDFEYaEAXtVlSnzGTjs5BjzZZSDOtTgizZpSDnl3ThVIFkaiXv--DGYo5izF1yFMK4gbyOHaQIVo_20HarcOi_HT6zrv2m6X_pzP4BKEZbOmkD8UlglJjPZELhvw-kW4tNs_q2K97iR-nN8xvGyh2mHAgjXm9saalzD0cAqzMFUXXNDhGfoyA/https%3A%2F%2Fwww.dropbox.com%2Fs%2F9pt8rti4yjudrza%2FLGI_QC.png%3Fdl%3D0.%2520I%2520>. I haven't been able to find any images of what this overlay should look like so I don't know if this is expected or if something has gone wrong with the processing. Any feedback would be greatly appreciated Best, Eric
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