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Hi,
I am using freesurfer 5.3.0. I would like to ask whether it is
possible or not to have different results for destrieux atlas
parcellation for the same data. (aparc.a2009s+aseg.mgz file). It seems
there is a little difference in terms of parce
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Hi,
I have a question about the lta files from the longitudinal pipeline (using the
–affine flag). Instead of just one .lta file from each timepoint to the
template 3 different .lta files are saved
-tp1_to_templ_norm.lta,
-tp1_to_templ_affine.lta,
-t
What is wrong?
On 10/6/2020 12:28 PM, Wenzhen Zhao wrote:
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Thank you for your help.
The smoothing issue occurs only on volume. It works okay with surface.
When I smooth the volume by 5, the results look like below. The
command I used was $preproc-sess -s
Sorry, qdec has been mothballed and we are not supporting it anymore
On 10/7/2020 7:12 AM, Agurne Sampedro Calvete wrote:
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Dear Freesurfer Experts,
Although I haven't had any problems with the qdec until now, this week
the qdec is having some errors when r
Sounds like you need to contact the people at BrainNetViewer
On 10/6/2020 8:00 PM, Xin Niu wrote:
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Dear freesurfer experts,
We have some files containing the values for regions based on the
Deskian/Killiany atlas like :
ROI, value
'lh_bankssts', .9
'lh_ca
not sure what you mean. can you elaborate?
On 10/7/2020 2:59 AM, goktekin.duru...@boun.edu.tr wrote:
> External Email - Use Caution
>
> Hi,
>
> I am using freesurfer 5.3.0. I would like to ask whether it is
> possible or not to have different results for destrieux atlas
> parcellation for
On 10/6/2020 4:26 PM, Batool Rizvi wrote:
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Hi,
I had a couple additional questions related to this topic.
1. The beta-coefficients I derived from using the mri_segstats command
with the input beta.mgh, are these values unstandardized?
Yes, that have not
I've never seen that one before. Can you post pictures of where you put
the control points? Are you sure you put them in voxels that are clearly WM?
On 10/6/2020 4:33 PM, Kazuki Sakakura wrote:
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Hello FreeSurfer Developers,
I'm attempting to compute recon-
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Dear Freesurfer Experts,
Although I haven't had any problems with the qdec until now, this week the
qdec is having some errors when receiving inputs from the keyboard. For
example, I can't write in the design name box, nor can I change the minimum
or m
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Hi Douglas,
I am trying to understand the reproducibility of
"aparc.a2009s+aseg.mgz" file. The main question is :
If I use the same data as an input (T1, T2 images), should I get the
"exactly" same result of "aparc.a2009s+aseg.mgz" file for free
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Hi,
I find it weird that it does not show full brain after smoothing (-fwhm 5).
Is this normal?
Also, even with -no-subcort-mask, volume analysis does not do full brain
analysis.
Best,
Wenzhen
On Wed, Oct 7, 2020 at 10:16 AM Douglas N. Greve
wrote:
Yes, you should. You must use the same platform though
On 10/7/2020 11:22 AM, goktekin.duru...@boun.edu.tr wrote:
> External Email - Use Caution
>
> Hi Douglas,
>
> I am trying to understand the reproducibility of
> "aparc.a2009s+aseg.mgz" file. The main question is :
>
> If I use the sam
Did you see the part about only analyzing subcortical gray matter
earlier in our conversation?
On 10/7/2020 12:00 PM, Wenzhen Zhao wrote:
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Hi,
I find it weird that it does not show full brain after smoothing
(-fwhm 5). Is this normal?
Also, even with -n
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Dear FS list,
as soon as samseg was available in FS v6dev we used it to process some
of our data. The plan was always to wait for v7 to use a stable version,
but edits were made already on v6FSdev, while we waited last spring for
v7 to come out.
No
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Dear FS list,
as soon as samseg was available in FS v6dev we used it to process some
of our data. The plan was always to wait for v7 to use a stable version,
but edits were made already on v6FSdev, while we waited last spring for
v7 to come out.
No
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Hi, thank you for getting back to me so quickly, I can confirm that it does
not run through on any scan and I have tried to run the command as you
suggested.
This is the error I am getting:
--n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.m
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Hi Dr. Greve,
Thank you for your response! Not sure if you already addressed this, but my
second question was whether there is a way to derive the (95%) confidence
intervals for my covariates that were included in the mri_glmfit analyses?
Thanks again
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Dear Freesurfer team,
when checking the output after recon-all i am having the issue that the
white matter surface extends too much into the cortex. I observe this in
most of my subjects (mostly in the posterior part of the brain) so it seems
to be a s
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HI, There
sorry for the late reply, I didn't see the reply due to the email setting
issues. I have tried the sudo command, but it still gave me the same error.
Best,
Wei
On Thu, Oct 1, 2020 at 2:56 PM Wei Shao wrote:
> Hello, Freesurfer team
>
> M
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