[Freesurfer] Subtraction of Stroke Volumes

External Email - Use Caution Hi All, I am looking for some help. I am working with stroke subject MRIs. For initial processing, I have "healed" the brains by applying the mirror image of the unaffected side. Now what I want to do is to subtract out only the area in which my le

Re: [Freesurfer] nuisance factors

Yes, you can. Contrast for what? Also, in theory, there should not be a change in eTIV with age. The "e" in eTIV means "estimated" and sometimes the estimate can get non-sensensical aspects to it. On 11/2/19 12:33 PM, Georgina Angelopoulou wrote: > > External Email - Use Caution > > Than

Re: [Freesurfer] Subtraction of Stroke Volumes

So,you have the surface-based BA4 label and a surface-based lesion label. You want to create a new label of BA4 that excludes the lesion label. Is that right? On 11/4/19 11:17 AM, Rellick, Stephanie wrote: > > External Email - Use Caution > > Hi All, > > I am looking for some help. I am

[Freesurfer] Using individual FreeSurfer utilities without the whole package

External Email - Use Caution Cursory googling has not turned up a solution to this, but I expect it may have been asked before. I would like to use several FreeSurfer utilities (mri_convert, mri_binarize, mri_pretess, mri_tesselate, mris_convert) in a docker container to post-proc

Re: [Freesurfer] Using individual FreeSurfer utilities without the whole package

Hi Mike our license lets you do pretty much whatever you want :). That said, the recon pipeline is complex and it isn't so easy to pick and choose steps, although I guess if you are just processing already datasets that have already been run through recon-all it should be pretty straightforwar