Re: [Freesurfer] 4 optseq2 questions

External Email - Use Caution Dear Douglas: Thanks so much for your quick reply! I appreciate your help a lot! Please see my answer below. I have 20 trials, and two conditions, "test" and "control", with 10 trials of each condition. In this example I only had 4 trials since I wa

Re: [Freesurfer] Problem with lme_mass_fit_vw

External Email - Use Caution Hi Jessica, the parfor_progress.m script, which is throwing the error, will create a text file in Matlab's current working directory. That file simply displays the progress of the parallelized computations. It seems that your current working directo

Re: [Freesurfer] Freesurfer V6 installation: ubuntu virtual machine

External Email - Use Caution I have successfully run freesurfer 6.0 recon-all under Ubuntu in the OS X Parallels VM, as a workaround for the OS X recon-all CachedArray.cc crash bug. Joe > On May 31, 2019, at 18:39, fsbuild wrote: > > External

[Freesurfer] Pial surface segmentation QC through recon-all

External Email - Use Caution Hello I just needed to get help from someone has experience working on correcting pial surface segmentation by recon-all. Based on FreeSurfer tutorial and some instructions I have found by googling I have found some clues that was helpful, but for the

Re: [Freesurfer] 4 optseq2 questions

The efficiency is low in part because you have only one presentation for each event type. The efficiency will scale with number of events for a given type and will decrease when you have more overlap in the HRFs. Whether it matters or not depends on how you are going to analyze your data. The op

[Freesurfer] error in matlab with segmentHA_T1.sh

External Email - Use Caution I have installed matlab 2018b and removed 2014b. When I run segmentHA_T1.sh the error reported below occurs: MATLAB is exiting because of fatal error /Applications/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 37:3955 Killed: 9

Re: [Freesurfer] error in matlab with segmentHA_T1.sh

External Email - Use Caution Please also take in account segmentation violation detected at Tue Jun4 00:57:53 2019 Configuration: Crash Decoding : Disabled Current Visual : Quartz Default Encoding : ISO-