External Email - Use Caution
Dear Freesurfer experts,
I need advice, the MRI operator need to confirm whether she had done the right
protocol of MP-RAGE. I have attached the picture that has been taken by her.
Please share some thoughts. Thank you in advance.
Yours faithfully
External Email - Use Caution
Hello,
I am running dt_Recon with the following specifications and am running into
this issue? I wasn't running into this issue previously. Two changes I made
are I added the --eres-save flag and I am running the code on the dev
version instead of the
Hi,
My university has a new FDM 3D printer which is able to print colours. They
want to print a brain in colour or maybe in multiple colours.
Is there anybody who knows how I could get it?
Best,
Markus
With best regards,
M.Eng. Markus May
Ph.D. Student at
Technische Hochschule Mitt
Hi Mustafa
MRI is an amazingly versatile technology that can be messed up in an
astonishing number of ways. By far the best thing to do would be to acquire
a dataset and run it through recon-all and see if the results look
accurate. If you have permission to do so, you are welcome to acquire on
External Email - Use Caution
Yes, the theshold was the solution. Thanks again for your precious help!
On Fri, Mar 29, 2019 at 3:50 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> What threshold are you using in tksurfer? It should be the same as
> -log10(cwp), where
External Email - Use Caution
This depends on the 3D model formats that your 3D printer will accept, and of
course what you want the colors to be (e.g., it could be different brain
regions according to some atlas, or a colormap of some cortical measurement
like the curvature at t
External Email - Use Caution
I've also done a brain print in color using Shapeways. There are probably a
number of ways to do it, but what ended up working for me is up on my github at
https://github.com/mangstad/freesurfer_to_3dprint
This uses freesurfer utilities to output the
Hi Mike,
That looks awesome! Thank you very much for your help, I can’t wait to test it.
Markus
> Am 02.04.2019 um 17:36 schrieb Angstadt, Mike :
>
>External Email - Use Caution
>
> I've also done a brain print in color using Shapeways. There are probably a
> number of ways to
It is having problems reading both the bvals and the bvecs
On 4/2/19 9:34 AM, Daniel Callow wrote:
>
> External Email - Use Caution
>
> Hello,
>
> I am running dt_Recon with the following specifications and am running
> into this issue? I wasn't running into this issue previously. Two
>
External Email - Use Caution
It might be an issue with the current freesurfer dev version because when I
change it back to the Freesurfer 6.0 version it works perfectly fine? And
has no issues reading them.
On Tue, Apr 2, 2019 at 1:51 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard
External Email - Use Caution
My reply was not posted, most likely because the email is too large so here is
the script:
mris_preproc --target fsaverage --hemi lh --no-prune --isp
$in/DMN/100206.newfar/lhsurf.mgh --isp $in/DMN/100206.newcentral/lhsurf.mgh
--isp $in/DMN/100307.new
External Email - Use Caution
Dear Freesurfer experts,
I would like to transform the task-based surface data to volume. May I know
if it is applicable? I tried "mri_surf2vol --o test.nii.gz --subject sub002
--so fs/sub002/surf/lh.white
fMRI/sub002/task/001/fmcpr.odd.sm5.fsaverage.l
Can you run it with --debug as the first option, capture the terminal
output, and send it to me?
On 4/2/19 4:02 PM, Sims, Sara A (Campus) wrote:
>
> External Email - Use Caution
>
> My reply was not posted, most likely because the email is too large so
> here is the script:
>
> mris_prep
On 4/2/19 4:23 PM, Zhi Li wrote:
>
> External Email - Use Caution
>
> Dear Freesurfer experts,
>
> I would like to transform the task-based surface data to volume. May I
> know if it is applicable? I tried "mri_surf2vol --o test.nii.gz
> --subject sub002 --so fs/sub002/surf/lh.white
>
External Email - Use Caution
Here is the output file with debug on:
http://gate.nmr.mgh.harvard.edu/filedrop2/?p=bes7rp27gk0
Thanks,
Sara Sims
Graduate Research Fellow
University of Alabama at Birmingham
Department of Psychology
205-975-4060
sno...@uab.edu
On 4/2/19, 3:34 PM,
You need a new version of mri_concat. I've put one here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_concat
Copy it to $FREESURFER_HOME/bin (after making a backup of the one
there), then re-run
On 4/2/2019 10:49 PM, Sims, Sara A (Campus) wrote:
> External Email - Use Caution
>
16 matches
Mail list logo
