External Email - Use Caution Yes, the theshold was the solution. Thanks again for your precious help!
On Fri, Mar 29, 2019 at 3:50 PM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > What threshold are you using in tksurfer? It should be the same as > -log10(cwp), where cwp is the --cwp threshold you used in mri_glmfit-sim. > If it is different, then it might not show all the cluster > > On 3/29/19 6:48 AM, Giuliana Klencklen wrote: > > External Email - Use Caution > Hi FS experts, > > I use tksurfer (e.g., tksurfer fsaverage/ lh inflated -gray) to open the > overlays (i.e., something.sig.cluster.mgh) I generated with the permutation > simulation correction. It goes perfectly well for most of them expect for > some, where the overlay does not show at all the significant clusters > summarized in the something.sig.cluster.summary. > > I run the mri_glmfit-sim command again but the problem persists. > > Does anyone have a clue about what is going wrong? > > Many thanks, > Giuliana Klencklen > > > -- > Giuliana Klencklen, Ph.D. > > Helen Wills Neuroscience Institute > University of California, Berkeley > 118 Barker Hall > Berkeley, CA 94720-3190 > 510-395-0040 > giuliana.klenck...@berkeley.edu > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Giuliana Klencklen, Ph.D. Helen Wills Neuroscience Institute University of California, Berkeley 118 Barker Hall Berkeley, CA 94720-3190 510-395-0040 giuliana.klenck...@berkeley.edu
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