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Hi again Doug
FYI have sent the files as requested
James
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Greve, Douglas N.,Ph.D.
Sent: 08 November 2018 15:01
To: freesurfer@nmr.mgh.harvard.edu
S
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Dear Freesufer team:
I have marked bounding box in the original DICOM File, and applied
autorecon1 to do the skull striping for the images. I want to transfer the
bounding box to the skull stripped output. How can I get the coordinates
transformation m
See whether this helps. You will have to go in the opposite direction,
but the idea is the same
https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
On 11/12/2018 02:00 PM, Min Zhang wrote:
>
> External Email - Use Caution
>
> Dear Freesufer team:
>
> I have marked bounding box
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Thank you!
I changed the event file and re-run the analysis. I got an error message
when creating the contrast:
mkanalysis-sess -analysis FF-MonkeyCassis-event.sm03.lh -surface
MonkeyCassis lh -fwhm 3 -fsd bold -per-run -event-related -paradigm FF.par
Can you include the command line and full terminal output? From what you
have below, it says it is only finding one non-null condition, so double
check your par files
On 11/12/2018 04:58 PM, Francesca Strappini wrote:
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> External Email - Use Caution
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> Thank you!
> I changed the event
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Hi all - I'm having a problem with recon-all in the current dev version
of Freesurfer. It is failing somewhere in the surface creation steps. I
get an error during mris_extract_main_component:
ERROR: MRISalloc: nvertices=-1879047998 < 0
No such file
Hi Baxter
we are seeing this locally as well. Probably a bug introduced into
the last day or two. We will post a fix soon
cheers
Bruce
On Mon, 12 Nov 2018, Baxter P. Rogers wrote:
>External Email - Use Caution
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> Hi all - I'm having a problem with recon-all in the current dev version
