Re: [Freesurfer] Cerelellar parcellation labels Request

2018-11-09 Thread Thomas Yeo
External Email - Use Caution Hi Fan, Yes. It seems that the link to the SUIT atlas is outdated. However, we are not the SUIT developers. You should consult the SUIT package ( http://www.diedrichsenlab.org/imaging/suit.htm) :) Regard, Thomas On Thu, Nov 8, 2018 at 1:48 PM dongnan

[Freesurfer] Fornix in TRACULA

2018-11-09 Thread Hayek, Dayana
External Email - Use Caution Dear all, In my research work, I am using Freesurfer for both grey and white matter segmentation. However, I am restricted in the white matter analysis since my studies and related to memory function and I am mainly interested in the Fornix.  I read in

Re: [Freesurfer] Multivariable linear regression with binary variables

2018-11-09 Thread Worker, Amanda
External Email - Use Caution Yes. I just want to use 7 of those variables as predictors and 2 as covariates of no interest in a linear regression model From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. Sent: 08

[Freesurfer] Ynt: Desikan Atlas in volume space (ece ulug)

2018-11-09 Thread ece ulug
External Email - Use Caution Doctor i opened annotation file by read_annotation.m, but then i looked your page, firstly thanks for your work! 'vertex_key.m' file is worked but not exactly I wanted, get.Seg.Coords.m file doesn't work and i think an example can be helpful. (for e

Re: [Freesurfer] Multivariable linear regression with binary variables

2018-11-09 Thread Greve, Douglas N.,Ph.D.
you have to make decisions about which interactions you want to model On 11/9/18 8:43 AM, Worker, Amanda wrote: External Email - Use Caution Yes. I just want to use 7 of those variables as predictors and 2 as covariates of no interest in a linear regression model __

Re: [Freesurfer] Consistent volume increases for some regions when using longitudinal stream

2018-11-09 Thread Pagliaccio, David (NYSPI)
External Email - Use Caution Hello, Our lab has been running a set of data from a pre/post-treatment study through the FreeSurfer v6 pipeline. I was comparing the pre-treatment structural values initially run through the cross-sectional pipeline with the same pre-treatment data

Re: [Freesurfer] Desikian-Killiany and Destrieux atlas

2018-11-09 Thread Giuseppe Cabras
For Destrieux atlas labels I think you may use Fig.1 and Tab.1 of the paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/ cheers, giuseppe On 08/11/2018 19:25, Miguel Ángel Rivas Fernández wrote: External Email - Use Caution Thank you very much Giuseppe, it's costing me m

Re: [Freesurfer] [External] Re: Nonsensical Vertex Coordinates, please help with interpretation

2018-11-09 Thread Bruss, Joel E
External Email - Use Caution Doug- I had time to play around with this, substituted the mri_mc command and success! Thank you so much for resolving this issue. Is this something that will be incorporated into the next release or will I have to remember to run this comma