[Freesurfer] Ynt: Ynt: İlt: Desikan Atlas in volume space

External Email - Use Caution Exactly. I cannot find in this file but i found lh.aparc.label and lh.aparc.annot files in freesurfer/subjects/fsaverage/label. Actually i told in my previous message. I need coordinates for generate caudalanteriorcingulate mask in coordinate system.

Re: [Freesurfer] Desikan Atlas in volume space (ece ulug)

External Email - Use Caution Hi Ece, I believe you will find a walkthrough of the steps to do exactly what you want done on my lab wiki: http://ccnlab.psy.buffalo.edu/wiki/index.php/Annotation_Coordinates Hope this helps, Chris /** *

Re: [Freesurfer] ?????? Recon-all run error

does it occur if you run it outside of recon-all? Do you have enough free ram? If so, you can filedrop us the dataset and we can try to replicate and fit ix. On Tue, 6 Nov 2018, 1013364183 wrote: External Email - Use Caution Dear Bruce,   I found the error location in the re

Re: [Freesurfer] Triangular mesh sampling problem

Hi yujunjie we have code interenally that will do what you are asking, but no binary, sorry. You could download our source code and try to write your own, although it will be a bit of a project. cheers Bruce On Tue, 6 Nov 2018, 1013364183 wrote: External Email - Use Caution  

Re: [Freesurfer] ICV normalization (longitudinal pipeline)

Hi Martin, ICV is head size. It is unlikely that anything except head growth in children changes head size. I don’t know of drugs that do that ;-). So it is best to assume that head size is fixed for adults. Usually results should have less variance if you remove the noise from the ICV estimat

Re: [Freesurfer] help with subjects concatenation/dimension inconsistency error

Oh yeah... That could actually be the problem! Thank you so much! Vale From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, November 05, 2018 4:33 PM To:

Re: [Freesurfer] mris_apply_reg failing for area/volume

External Email - Use Caution Hi Bruce I realise that my last message made it sound as though the problem was fixed. However, I was only confirming that the files load fine in freeview (are not corrupted) as asked. The issue of many subs area and volume files failing to register

[Freesurfer] Extracting values from a single vertex

External Email - Use Caution Hi FreeSurfer users, I want to extract thickness values at a single vertex. I searched on the support list and found an mris_convert command to use. However, the file I want to extract values from is a volume with multiple frames. When I try to use