Re: [Freesurfer] recon-all exits with errors

glad to hear it worked out Bruce On Sat, 7 Oct 2017, Ali Radaideh wrote: Dear Bruce, many thanks for your email. I have noticed that the FreeSurfer I am still using is 5.3.0 and this version seems not to work with my Ubuntu 16.10 due to issues related to the current version of "Perl" (version

[Freesurfer] Extracting values via mri_segstats from middle of the cortex

Hi, I have a MT and T1W volume (processed through recon-all). I would like to extract all MT values that lie in the middle surface of the cortex, and run that through mri_segstats so I get average MT values for each cortical region in the DK-atlas. My workflow is as follows: 1. mri_vol2suf --mov

Re: [Freesurfer] Original dimension

Dear Experts, I've run " mri_label2vol --seg aseg.mgz --temp rawavg.mgz --o aseg-in-rawavg.mgz --regheader aseg.mgz" as explained, however i can't see any changes in dimension in comparision to the the predefined aseg.mgz. I'd appreciate your help with it. Thanks for your attention. I'm looking for