Sorry, another question, in your update package, you just offered Cnetos and
MacOSX lion, MacOSX snow leopard, but my machine is Ubuntu14.04, So can I use
the CentOS
Thanks in advance
Hao
De : freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Hao we
Hello, Freesurfer experts:
I want to ask you in TRACULA, we can define multiple bvecs with the variable
'bveclist' in configuration file, so my question is if we have the same option
for bval, or it is mandatory to have the same bvals for all the subjects??? I
dont see any information about thi
Hi Hao - This is also coming in the next version :)
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Hao wen
[hao.freesur...@hotmail.com]
Sent: Monday, December 19, 2016 5:43 AM
To: freesurfer@nmr.mgh.harvard.
Great, if you can add some choice to run these subjects in parallelized, like a
flag '-n_threads', this will be perfect considering the time-consuming problem,
good job!
Good day
De : freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Yendiki, Anastasia
E
Yes, you can use centos.
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Hao wen
[hao.freesur...@hotmail.com]
Sent: Monday, December 19, 2016 3:05 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA
Hi Anand
have you run recon-all yet? Ideally you would give it a non-enhanced 3D
T1 (like an mprage). We don't segment vessels though, for that you will
need to use some other software.
cheers
Bruce
On Mon, 19 Dec
2016, anand iyer wrote:
> Hi
> Could you please help with this?
>
> I am ab
There will be an option to print out command lines that can then be submitted
to a cluster in parallel. Hope this helps.
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Hao wen
[hao.freesur...@hotmail.com]
Sent:
Hi Bruce,
Thank you so much for the answer.
I have used "read_surf.m" function and got the list of vertex locations and a
list of faces. However, the list contains 107106 vertices whereas the
lh.thickness.asc file contains 118603 vertices. How can I match the thickness
values which are inlh.
that shouldn't be the case. Run mris_info or mris_euler_number on your
input surface. Can you load the thickness as a surface overlay? It may be
that you regenerated surface and not the htickness, or visa-versa. Which
surface are you using?
On Mon, 19 Dec 2016, Onur Uğurlu wrote:
Hi Bruce,
This is being generated by an earlier step in the trac-all -prep right?
On Fri, Dec 16, 2016 at 4:23 PM, Yendiki, Anastasia <
ayend...@mgh.harvard.edu> wrote:
> It doesn't recognize the format of your field map. It assumes that the
> field map has either 2 frames (2 phase maps) or 1 frame (a phas
No, it's a separate scan that you provide.
From: Katherine Damme [katherine.da...@gmail.com]
Sent: Monday, December 19, 2016 1:43 PM
To: Freesurfer support list; Anastasia Yendiki
Subject: Re: [Freesurfer] Tracula Set: No Match
This is being generated by an earlie
FreeSurfer experts,
I am attempting to use the two stage model for longitudinal analysis,
however I keep receiving an error message that my design matrix is poorly
scaled.
I'm curious, I've used the same format of design matrix on cross
sectional without problem.
Anyway here is the command line i
Dear Freesurfer experts,
I'm using freesurfer to process my monkey brain data. It reported errors during
Talairach registration step. So I added no-tal-check tag to run recon-all
autorecon1 and used tkregister2 to manually edit registration. However, I
couldn't let them perfectly fitted, espec
Is this meant to be calculated from the B0 dicoms?
On Mon, Dec 19, 2016 at 12:44 PM, Yendiki, Anastasia <
ayend...@mgh.harvard.edu> wrote:
> No, it's a separate scan that you provide.
>
> --
> *From:* Katherine Damme [katherine.da...@gmail.com]
> *Sent:* Monday, Decemb
No - there is no relation between B0 field inhomogeneities (measured by a field
map) and b=0 volumes. The capital B refers to the magnetic field in the
scanner, the small b is the b-value (diffusion weighting).
From: freesurfer-boun...@nmr.mgh.harvard.edu
[frees
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