Hello freesurfer experts,
I've recently set up a PC running Ubuntu 16.04LTS and tried to run a
freesurfer version which was running well on another PC (also running
Ubuntu 16.04LTS)...the nightly build for centos6 of 2016-09-03. I'm
running the recon-all script. While running mri_ca_register, I
Hi Nasos
how much RAM is on your new PC?
cheers
Bruce
On Wed, 7 Dec 2016, Nasos Petridis wrote:
> Hello freesurfer experts,
>
> I've recently set up a PC running Ubuntu 16.04LTS and tried to run a
> freesurfer version which was running well on another PC (also running
> Ubuntu 16.04LTS)...the ni
use tkmedit or freeview
On 12/07/2016 07:43 AM, Hao wen wrote:
>
> Thanks for your advice,
>
> After I got 'out.mgz', I know for aparc.annot, pysurfer use tksurfer
> to visualize the map, but for aseg.annot, because it is volume_based
> analysis, I want to have some thing like this, which has
Hi Xavier, please remember to post to the FS list. Answers below
On 12/07/2016 08:19 AM, Xavier Guell Paradis wrote:
> Dear Dr. Greve,
> Thank you very much for your reply. I have one last question, which I
> think is a very basic concept that I understood wrong:
> If I want to compare finger ta
Hi Vivek - I suspect that you are specifying the DWI dicom of one of the
subjects, and trac-all uses the default 60-direction Siemens gradient table.
It's hard to know without seeing your configuration file.
How are you merging the DWIs of the two subjects? You only mention how you
co-register
On Mon, Dec 5, 2016 at 12:00 PM, Yendiki, Anastasia <
ayend...@mgh.harvard.edu> wrote:
> Hi Katherine - The error occurs when processing this file:
> /media/Data/Temple/Temple_Tracula/31313422_10128/dmri/bvecs.norot
>
> Can you send this file? Thanks!
>
> a.y
> --
> *Fr
Dear FS users,
No I can't run it without anonymization.
Anyway, I do not know if this can be of any help but here attached you can see
the error that stopped the reconstruction when I tried to run the nifti version
of the "mosaic' dicom; I transformed the dmc2nii with MRIcron.
Thanks,
Marian
Dear FS users,
No I can't run it without anonymization.
Anyway, I do not know if this can be of any help but here attached you can see
the error that stopped the reconstruction when I tried to run the nifti version
of the "mosaic' dicom; I transformed the dmc2nii with MRIcron.
Thanks,
Marian
Dear FS team,
I have one short question regarding Optseq:
What is the recommended psdwinMAX value for events of 8s?
I have read in this forum that events of 3s should have a psdwinMAX of 21s or
even 24s; does this mean that events of 8s should have a psdwinMAX of 26-29s?
Thank you very much,
Xavi
Yea, 26 sec should be ok
On 12/07/2016 02:46 PM, Xavier Guell Paradis wrote:
> Dear FS team,
> I have one short question regarding Optseq:
> What is the recommended psdwinMAX value for events of 8s?
> I have read in this forum that events of 3s should have a psdwinMAX of
> 21s or even 24s; does
sorry, if it has lost critical parameters, then we can't recover from it.
On 12/07/2016 01:20 PM, Marianna Riello wrote:
> Dear FS users,
>
> No I can't run it without anonymization.
> Anyway, I do not know if this can be of any help but here attached you can
> see the error that stopped the rec
Thanks. This looks fine. When you run that xfmrot command directly on the linux
command line, do you get the same error?
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Katherine Damme
[katherine.da...@gmail.com
Hey Doug,
First, thanks for your previous answer, it helped me to clarify some issues.
Lately, I’ve been doing what you suggested. But something just caught my
attention. To recap, I was testing with DODS for an interaction of a continuous
variable (age) with two discrete factors, diagnosis (
Hi Bruce,
Many thanks. The PC has nominally 8Gb of RAM. The recon-all.log gives
the following
totalusedfree
shared buff/cache available
Mem:8142944 1081848 6041324 44260 1019772 6725212
Swap: 8353788
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