Re: [Freesurfer] Pial refinement with FLAIR

2016-08-31 Thread Eelco Van Duinkerken
Thanks for the suggestion Bruce! That totally solved the problem! Good to know that with the upcoming version this is solved. Eelco > On 30 Aug 2016, at 12:36, Bruce Fischl wrote: > > Hi Eelco > > we've made a bunch of improvements in the T2/FLAIR stream since 5.3 so you > might check them

Re: [Freesurfer] REPOST: problem with Qdecrc file

2016-08-31 Thread Clara Kühn
Dear FreeSurfer experts, I still don't seem to be able to choose spc and rate etc from the dropdown menu in QDEC. Is there an option to perform the longitudinal 2 stage model in the command line instead of QDEC? Thank you! Clara - Ursprüngliche Mail - Von: "ckuehn" An: "Freesurfer sup

Re: [Freesurfer] REPOST: problem with Qdecrc file

2016-08-31 Thread Douglas Greve
Try long_mris_slopes On 8/31/16 8:34 AM, Clara Kühn wrote: > Dear FreeSurfer experts, > > I still don't seem to be able to choose spc and rate etc from the dropdown > menu in QDEC. Is there an option to perform the longitudinal 2 stage model in > the command line instead of QDEC? > > Thank you!

Re: [Freesurfer] 答复: Questions about surface coordanates

2016-08-31 Thread Douglas Greve
if that is fsaverage, then mni and ras should be the same On 8/30/16 9:37 PM, Dongnandi wrote: Thanks a lot! Just want to make sure that the “RAS”(FS cords?) and “MNI Talairach” is the MNI305 coords. *发件人:*freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.e

Re: [Freesurfer] REPOST: problem with Qdecrc file

2016-08-31 Thread Clara Kühn
Hi Doug, I did that. I followed the tutorial and am now stuck at qdec where the .Qdecrc file doesn't do the trick and I can't choose the spc or anyother measure that I specified in that file. I opened qdec in the folder where I store the .Qdecrc and table files. Any other ideas? Cheers Clara

[Freesurfer] LGI problem

2016-08-31 Thread Alan Francis
Hi Marie: I am trying to run the LGI algorithm on 32 brains. As shown in the archives, I set the environment (on tcsh) and provided the MATLAB pathway. [afrancis-mac:~] afrancis% setenv MATLABPATH /Applications/MATLAB_R2015a.app/ [afrancis-mac:~] afrancis% setenv PATH ${MATLABPATH}/bin:${PATH} I

[Freesurfer] Satellite Symposia - Resting-State and Brain Connectivity Conference

2016-08-31 Thread Anastasia Yendiki
Dear FreeSurfers - If you're attending the Resting-State and Brain Connectivity Conference in Vienna, you can now register for satellite symposia, including one on diffusion MRI. Hope to see you there! a.y -- We are pleased to inform you that registration for the six Satellite Sym

Re: [Freesurfer] About TRACULA results

2016-08-31 Thread Anastasia Yendiki
Hi there - If you upload the tracula directories for me, I'm happy to try to figure out what's going on. Although honestly at this point it's worth waiting for the new version. Thanks! a.y On Tue, 30 Aug 2016, Kang, XJ wrote: Hi, I am trying to computer the changes of cortical parcellat

Re: [Freesurfer] About TRACULA results

2016-08-31 Thread Kang, XJ
Thank you for your reply. I will wait for the new version, hopefully in months. On 8/31/2016 1:54 PM, Anastasia Yendiki wrote: Hi there - If you upload the tracula directories for me, I'm happy to try to figure out what's going on. Although honestly at this point it's worth waiting for the