Hi Salvatore
that is a very large defect - about 1/4 the size of a typical surface.
Usually that means something big is wrong and you'll need to correct it
manually. You can visualize the defects on the ?h.orig.nofix and
?h.inflated.nofix surfaces and use them to figure out what is causing the
It is mainly the OS version, yet, sometimes the same OS can run on very
different architectures (eg. on 32bit or 64 bit systems, or even tablets
and phones), which could affect results. Starting with Lion, OSX only
runs on 64 bit systems though.
Best, Martin
On 01/05/2016 02:09 AM, Kasper J
Hi FreeSurfer Experts,
Happy New Year!
I am using mri_convert to extract b vectors (bvecs) from diffusion images
obtained at Bay 4. Then I use TRACULA for reconstructing white-matter pathways.
The shape of the reconstructed pathways are odd, so I checked if the extracted
bvecs are correct.
T
Hi Ajay
it's kind of dicey to use an arbitrary nightly build as we have no idea
what was in that that might have been fixed the next day. I would wait
for a beta, or at the very least try a new version as I don't think our
current version exhibits the behavior you are experiencing.
cheers
Br
Hi Professor Yeo,
Sorry for the late reply.
In the end I ended up giving in and performing my functional connectivity
analysis in MNI space, like any rational person would. As a result, I ended up
using the MNI152 versions of network masks you provided.
Thanks for all your help, and for pro
Dear experts,
I'm trying to adopt the HCP pipeline to our own data but at it is
originally developed for human adults it fails frequently on my data. A big
chunk of the pipeline is based on FreeSurfer so I thought it should be most
relevant to ask my question here.
the main problem I have here is
Hello ,
I have an image with .img format and an image with .hdr format.
Freesurfer cant run them. What im suppose to di0o??? I just want to view
the image.
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailm
please see surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
On 01/05/2016 12:51 PM, Hassan bakhshi wrote:
>
> Hello ,
>
> I have an image with .img format and an image with .hdr format.
>
> Freesurfer cant run them. What im suppose to di0o??? I just want to
> view the image.
>
>
>
> _
How does it look in tksurfer?
On 01/04/2016 03:29 PM, Mihaela Stefan wrote:
> Hi Doug,
>
> I am going back to this old email.
> I was able to brake the annot file into separate labels and I created
> a new annotation file with only the labels that I was interested in.
> However, the inflated sur
It worked in tksurfer!
Thanks!
Mihaela
On Tue, Jan 5, 2016 at 1:13 PM, Douglas N Greve
wrote:
> How does it look in tksurfer?
>
> On 01/04/2016 03:29 PM, Mihaela Stefan wrote:
> > Hi Doug,
> >
> > I am going back to this old email.
> > I was able to brake the annot file into separate labels and
ok, that means a bug in freeview.
On 01/05/2016 02:15 PM, Mihaela Stefan wrote:
> It worked in tksurfer!
> Thanks!
> Mihaela
>
> On Tue, Jan 5, 2016 at 1:13 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> How does it look in tksurfer?
>
> On 01/04/2016 03:29 PM, Mihael
Hello Freesurfer experts,
I need help me finding how to get the minimum number of vertices required
to pass the cluster-corrected threshold with monte carlo simulations used
in qdec for a surface based analysis?
This is per a reviewer request, but I cannot find anything on the wiki or
in the mail
12 matches
Mail list logo
