It worked in tksurfer! Thanks! Mihaela On Tue, Jan 5, 2016 at 1:13 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote:
> How does it look in tksurfer? > > On 01/04/2016 03:29 PM, Mihaela Stefan wrote: > > Hi Doug, > > > > I am going back to this old email. > > I was able to brake the annot file into separate labels and I created > > a new annotation file with only the labels that I was interested in. > > However, the inflated surface disappears when I upload my own > > annotation in freeview. Only the labels are shown (see attachment). If > > I select "show outline only", then the inflated surface remains > > displayed. How can I keep the inflated surface displayed while I am > > loading the annotation file? > > > > On a different note, I could upload multiple labels in the same time > > in freeview in the past. Now I can only upload one label at the time. > > I wonder if there is some setting that I am missing. > > > > Thanks! > > Mihaela > > > > On Wed, Oct 28, 2015 at 1:29 PM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > Break up the annot into separate labels then recombine the ones > > you want > > into a new annotation. Use mri_annotation2label for the first step > > then > > mris_label2annot for the second. > > > > > > On 10/27/2015 02:35 PM, Mihaela Stefan wrote: > > > Hello Freesurfers, > > > > > > I would like to be able to display just a few parcels from the > > Desikan > > > atlas on the fsaverage inflated surface. For example, I would > > like to > > > display only the superiorfrontal and the posteriorcingulate. I > tried > > > to recreate the parcels myself by drawing labels, but they don't > > look > > > pretty (see the attachment). > > > I traced the labels in qdec (based on the Annotation/Opacity > > tab) and > > > then I mapped them to fsaverage and visualized them with freeview. > > > > > > There's probably a better way to do that but I couldn't figure > > it out. > > > Can anyone help me with this? > > > > > > Thanks! > > > Mihaela > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 <tel:617-724-2358> > > Fax: 617-726-7422 <tel:617-726-7422> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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