Hi Erica,
You can try this link:
https://dl.dropboxusercontent.com/u/5734119/Outgoing/Yeo_JNeurophysiol11_SplitLabels.zip
Regards,
Thomas
On Wed, Oct 7, 2015 at 2:45 AM, Yi-Chia Erica Kung wrote:
> Dear Prof. Yeo,
>
> I would like to extract the brain regions of the functional canonical
> netwo
Hi Feng
they are slightly different measures so which one you use really depends
on your biological hypothesis.
For thickness there are multiple measures within each ROI but only one area
(that of the whole ROI), so mean and std doesn't make sense.
cheers
Bruce
On Wed, 7 Oct 2015, chenhf_u
Hi Freesurfers!
I am using development version of mri_glmfit (as I want to take advantadge
of --frame-mask option).
As control analysis I performed an identical (simple) analysis both in
mri_glmfit and its dev version.
Suprisingly, while F.nii.gz were identical for the given contrast
sig.nii.gz m
I thought that we calculate the Surface area, MeanCurv, GausCurv, FoldInd and
CurvInd in each vertex, and thus we can obtain the whole map on the surface.
Subsequently, using the predefined atlas, we can further obtain the mean and
std value in each brain region (because each vertex has a value)
Hi Feng
thickness has a biological meaning as a point measure, but area does not.
The area of any given triangle doesn't carry any biologically relevant
information that I can think of, which is why we don't quantify the
statistics of the area of individual triangles
cheers
Bruce
On Wed, 7
Thanks for your answer. But I am not so sure about what I am doing here, could
you please check here. The main idea is to extract ROI average time series from
different layer surface.
what I have done
1 using mris_expand to get intermediate layer, such as lh. white_outer0.16GM.
2 using bbreg
when you say "both versions" what do you mean? Just two different calls
to the dev version of mri_glmfit? Or one call to the 5.3 and one call to
the dev? What are your command lines? What is the terminal output?
On 10/7/15 10:54 AM, Dídac Vidal wrote:
Hi Freesurfers!
I am using development ve
First of all, don't use paint output, use an mgh file (paint is old and
does not handle multiple time points).
mri_segstats --slabel subject hemi /path/to/your/label --avgwf out.dat
--id 1 --i output.of.vol2surf.mgh
On 10/7/15 11:31 AM, Yun Wang wrote:
Thanks for your answer. But I am no
Thanks! It works!
> On Oct 7, 2015, at 10:31, Yun Wang wrote:
>
> Thanks for your answer. But I am not so sure about what I am doing here,
> could you please check here. The main idea is to extract ROI average time
> series from different layer surface.
>
> what I have done
> 1 using mris_ex
Hi,
When I meant both I meant one dev and one 5.3.
The mri_glmfit commands was the next one which was send to a cluster:
It consisted in a one group with two covariables design.
mri_glmfit \
*--y cespct.nii.gz \--fsgd ${fsgd_file}\--C Int
\-
Hi,
I'm using Freesurfer5.3 using virtual box on Windows 7, and need to be able to
access/transfer my DICOM data from my windows hard drive to the
freesurfer/subjects folder in the virtual box. There is unfortunately no help
documentation on the quick install webpage for accessing shared driv
Negar,
I remember I had the same problem and it wasn't straight forward for me.
Try this and see what happens:
1- First share it through Machine-> settings->Shared folders
2- Then run this command in terminal: sudo apt-get install
3- Then run sudo apt-get install virtualbox-ose-guest-x11
4- Re
I think it should be fine. Do the segmentations and surfaces look accurate?
> On Oct 7, 2015, at 10:54 PM, Thục Trinh wrote:
>
> Hi Freesurfer Experts,
>
> We are on the process of troubleshooting on all of our subjects and come
> across with the problem that we have not faced before. Here it
Dear Freesurfer experts,
I used qdec for group comparison, but there is error (acctached error.png).
I check all the files but do not find where is the erros.
Could anyone give me some suggestions?
Best,
Feng
fsid.levels
Description: Binary data
gender.levels
Description: Binary data
group
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