Re: [Freesurfer] midbrain mask

2015-04-16 Thread André Schmidt
I have feared that. Sorry for asking, but do you have an atlas in mind for my purpose? Cheers Andre Von: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu]" im Auftrag von "Bruce Fischl [fis...@nmr.mgh.harvard.edu] Gesendet:

Re: [Freesurfer] midbrain mask

2015-04-16 Thread Bruce Fischl
not if you don't have any anatomical images Bruce On Thu, 16 Apr 2015, André Schmidt wrote: I have feared that. Sorry for asking, but do you have an atlas in mind for my purpose? Cheers Andre Von: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-bo

Re: [Freesurfer] Advice - best method, longitudinal vs. cross-sectional

2015-04-16 Thread Pradeep
Hello All, I have pre-processed a subject that has T1 scans at 3 time points using the freesurfer cross-sectional and longitudinal methods. The results show a lot of variability. I have attached the plots. Any advice would be much appreciated. Thanks, Pradeep On Wed, Apr 15, 2015 at 5:26 PM, Pra

Re: [Freesurfer] Installing FreeSurfer on Fedora 21

2015-04-16 Thread Ranjan Maitra
Zeke and others, I wanted to let you know that installing it on the local hard drive gets around the issues. I sincerely appreciate your help and thank you very much for the time taken in helping out. Many thanks, Ranjan > -Original Message- > From: zkauf...@nmr.mgh.harvard.edu > Sent

[Freesurfer] Is the linux centos package compiled with openmp enabled?

2015-04-16 Thread jupiter
Hi, I've installed FreeSurfer from a binary package freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz., does that package was compiled witn ---enable-openmp? Thank you. Kind regards, - j ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.ed