Re: [Freesurfer] holes in inflated using mris_label2annot

2014-08-02 Thread April Clausen
The command line for mapping the labels from fsaverage to the subject (april) was, mri_label2label —srcsubject fsaverage —srclabel rh.aprilOne.label —trgsubject april —trglabel rh.aprilOne.label —hemi rh —regmethod surface this was repeated 5 more times for labels rh.aprilTwo.label to rh.aprilS

Re: [Freesurfer] Repost | Re: mni152reg error

2014-08-02 Thread jaco...@nmr.mgh.harvard.edu
Good Morning Doug, Thank you for the help, these commands seem to work beautifully! Much appreciated, Jacob > > Try this: > > First, compute the registration between the bold and the 152 > mri_matrix_multiply -im bold/register.dat -iim > mri/transforms/reg.mni152.2mm.dat -om bold-to-mni152.reg

Re: [Freesurfer] Freesurfer Start Up

2014-08-02 Thread Bruce Fischl
do those files exist in that path? cheers Bruce On Sat, 2 Aug 2014, Isaiah C. Smith wrote: Hello Bruce, I am trying to check the output of the mri data that I processed I start using MNE. I placed the file in a folder called Practice in my documents, and I am using the following command: tcs

Re: [Freesurfer] holes in inflated using mris_label2annot

2014-08-02 Thread Bruce Fischl
Hi April what version are you using and what operating system? There was a bug that caused holes in labels that we fixed not that long ago. cheers Bruce On Sat, 2 Aug 2014, April Clausen wrote: The command line for mapping the labels from fsaverage to the subject (april) was, mri_label2