[Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Dear FreeSurfers, I have imported several dicom files with recon-all -i -subjid id. All files were imported correctly, apart from one subjects. When I try to convert it direcelty with mri_convert -ot mgz dicom//1.dcm -s I get this error message. WARNING: files are not found to be diff

[Freesurfer] webiste is down

Just a heads up that the Freesurfer website is down as of 6:36 am EST 5 July Arman ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only f

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Cut-and-paste the following info into your FreeSurfer problem report: - FREESURFER_HOME: /usr/local/freesurfer Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Debian version: jessie/sid Kernel info: Linux 3.13.0-

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Knut can you run mri_info on that dicom file? thanks Bruce On Sat, 5 Jul 2014, Knut J Bjuland wrote: > Cut-and-paste the following info into your FreeSurfer problem report: > - > > FREESURFER_HOME: /usr/local/freesurfer > >

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Knut is the FOV really 384mm?? That's awfully big and seems more likely to be an error in the dicoms than real. cheers Bruce On Sat, 5 Jul 2014, Knut J Bjuland wrote: > Dear FreeSurfers, > > I have imported several dicom files with recon-all -i -subjid id. All > files were imported correctly

Re: [Freesurfer] Edit Recommendations

Hi Erik if it is jagged in one plane then it is usually not a problem. What this means is that the surface is very close to parallel to that plane and so crosses into and out of it many times. This can cause a smooth surface to appear jagged when you slice it to visualize a 3D intersection of

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Bruce mri_info The output is as following. Please tell me if you need the dicom. Thank you for your attention. Knut J mri_info /home/freesurfer/subjects/dicom//1.dcm INFO: Found 324 files in /home/freesurfer/subjects/dicom/ INFO: Scanning for Series Number 17 INFO: found 320 files in

Re: [Freesurfer] mri_convert WARNING: files are not found to be different and cannot be sorted and cannot fit in 256^3 mm^3 volume.

Hi Bruce That right. After the dicom were converted to nii.gz it imported and processed into recon-all without any problem. Please see my other mail with mri_info. mri_convert /home/freesurfer/subjects//mri/rawavg.mgz /home/freesurfer/subjects//mri/orig.mgz --conform $Id: mri_convert.c

Re: [Freesurfer] webiste is down

thanks, we'll investigate On Sat, 5 Jul 2014, Arman Eshaghi wrote: Just a heads up that the Freesurfer website is down as of 6:36 am EST 5 July  Arman ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/